Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   AB9L16_RS22010 Genome accession   NZ_CP168138
Coordinates   4867962..4869551 (+) Length   529 a.a.
NCBI ID   WP_305381549.1    Uniprot ID   A0AAQ3J5H1
Organism   Pseudomonas sp. LW8     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4862962..4874551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L16_RS21990 (AB9L16_21990) pgeF 4864762..4865484 (-) 723 WP_095181838.1 peptidoglycan editing factor PgeF -
  AB9L16_RS21995 (AB9L16_21995) rluD 4865481..4866443 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AB9L16_RS22000 (AB9L16_22000) - 4866595..4867611 (+) 1017 WP_375122702.1 outer membrane protein assembly factor BamD -
  AB9L16_RS22005 (AB9L16_22005) - 4867739..4867972 (+) 234 WP_056790465.1 PP0621 family protein -
  AB9L16_RS22010 (AB9L16_22010) pilS 4867962..4869551 (+) 1590 WP_305381549.1 PAS domain-containing sensor histidine kinase Regulator
  AB9L16_RS22015 (AB9L16_22015) pilR 4869548..4870894 (+) 1347 WP_375122703.1 sigma-54-dependent transcriptional regulator Regulator
  AB9L16_RS22020 (AB9L16_22020) thiO 4870987..4872087 (-) 1101 WP_252878916.1 glycine oxidase ThiO -
  AB9L16_RS22025 (AB9L16_22025) - 4872145..4872546 (-) 402 WP_375122704.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58612.28 Da        Isoelectric Point: 6.8632

>NTDB_id=1042509 AB9L16_RS22010 WP_305381549.1 4867962..4869551(+) (pilS) [Pseudomonas sp. LW8]
MVAEAVNADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSENLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSHLQGHLID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGETREQATER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQADVWLALFVDPDSQLAVLEVQDNGPGVSADEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFCITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=1042509 AB9L16_RS22010 WP_305381549.1 4867962..4869551(+) (pilS) [Pseudomonas sp. LW8]
GTGGTCGCTGAGGCCGTCAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTCTACCGTTTAAGTGT
CGGCATCACTCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GCGGCAGCTGGCTGTACCTGATCATCAATATGCTGCTGGTGGTGTTCCTCGAAAACACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCCCTCGTCGACGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCCGGCGGCGTGGCCAGTGCGCTGGGCAATTT
GCTGGTGGTCTCGGTGGCGATCAGCAACACCCTGCTGCGCCGACGCATCGGCCTGCTGATTGCCGCCATTGCGGCGATCG
GCATTGTCGGCCTGAGTTTTCTGCTGGGACTCAGCCGCCCCTTGAGCGCCAACGCGTACCTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTCGCCGCCTCACTGCTGGTGCAAGGGCTGATTCGTCGCCTCGAAGTCAGCGAGAACCTGGCCGAACAACG
CGCCAGCGAAGTGGTCAGCCTAGAGGCGTTGAACGCGTTGATCCTACAACGCATGCGCACGGGGATTCTGGTGCTCGACG
AACAACGCCGGGTGCAACTGGCCAATCACAGTGCGCAGAGTCTGCTCGGCCATAGTCACCTGCAAGGTCATTTGATCGAC
GAATATTCGCCAGCACTCGTCGAGCGCCTGCAACTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAATGGCCTTGAGCTGCAACCCAGCTTCATCGCTCTCGAGCAGAGTCCGAACCAGCAGACACTGGTGTTTCTCGAAG
ACCTGGCGCAAATCACCCAACAAGCCCAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCACTGGGCGCGATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGACG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGACTTCGTCGGCGAAACCCGCGAGCAGGCCACCGAACGC
CAGCACATTCATCTGCGAATCAATTCCGGCGATTTCACCACACTGATGGACCCCAACCAGCTGCGGCAGATTCTCGACAA
TCTGATCCGCAACGCCTGGCGTCACAGTGCCCAACTGCACGAGCAGGCCGACGTCTGGCTGGCACTGTTCGTCGACCCCG
ACAGCCAATTGGCAGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGTCGGCCGATGAACAGGCGCATCTGTTTGAGCCG
TTCTTCACTACGAGCAGTCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTTGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.434

100

0.595

Multiple sequence alignment