Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACDZ29_RS10450 Genome accession   NZ_CP168135
Coordinates   2049853..2050383 (-) Length   176 a.a.
NCBI ID   WP_370016943.1    Uniprot ID   -
Organism   Peribacillus sp. RS7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2044853..2055383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ29_RS10430 (ACDZ29_10345) rplI 2045917..2046366 (-) 450 WP_289314148.1 50S ribosomal protein L9 -
  ACDZ29_RS10435 (ACDZ29_10350) - 2046363..2048333 (-) 1971 WP_289327192.1 DHH family phosphoesterase -
  ACDZ29_RS10440 (ACDZ29_10355) - 2048372..2049319 (-) 948 WP_370016942.1 YybS family protein -
  ACDZ29_RS10445 (ACDZ29_10360) rpsR 2049566..2049805 (-) 240 WP_230161608.1 30S ribosomal protein S18 -
  ACDZ29_RS10450 (ACDZ29_10365) ssbA 2049853..2050383 (-) 531 WP_370016943.1 single-stranded DNA-binding protein Machinery gene
  ACDZ29_RS10455 (ACDZ29_10370) rpsF 2050453..2050737 (-) 285 WP_034316153.1 30S ribosomal protein S6 -
  ACDZ29_RS10460 (ACDZ29_10375) ychF 2050943..2052043 (-) 1101 WP_289314144.1 redox-regulated ATPase YchF -
  ACDZ29_RS10465 (ACDZ29_10380) - 2052210..2052407 (-) 198 WP_289314143.1 DUF951 domain-containing protein -
  ACDZ29_RS10470 (ACDZ29_10385) - 2052429..2053265 (-) 837 WP_375090808.1 mechanosensitive ion channel family protein -
  ACDZ29_RS10475 (ACDZ29_10390) yyaC 2053653..2054288 (+) 636 WP_289327196.1 spore protease YyaC -
  ACDZ29_RS10480 (ACDZ29_10395) - 2054341..2055042 (-) 702 WP_289314140.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 19520.19 Da        Isoelectric Point: 4.8195

>NTDB_id=1042469 ACDZ29_RS10450 WP_370016943.1 2049853..2050383(-) (ssbA) [Peribacillus sp. RS7]
MMNRVVLVGRLTKDPELRYTPNGVPVATFTLAVNRSFTNQQGDREADFINCVVWRKPAENVANFLKKGSLAGVDGRVQTR
NYEGQDGKRVYVTEILAESVQFLEPRSSSAGERNEGGSYGGGQKSYSNNNNGNDNNSYGQNPNQNQRSNNNYTRVDDDPF
ANDGKTIDISDDDLPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=1042469 ACDZ29_RS10450 WP_370016943.1 2049853..2050383(-) (ssbA) [Peribacillus sp. RS7]
ATGATGAATCGCGTAGTTTTGGTAGGACGCTTAACTAAAGATCCTGAATTACGATATACACCTAATGGAGTTCCCGTAGC
TACCTTTACTTTAGCTGTGAACCGTAGTTTTACGAATCAGCAGGGTGACCGTGAAGCGGATTTCATTAACTGTGTTGTTT
GGCGTAAACCGGCAGAAAATGTAGCTAACTTCTTGAAAAAGGGCAGTTTAGCTGGCGTGGATGGACGTGTCCAAACACGT
AATTATGAAGGACAAGACGGCAAACGCGTATATGTGACGGAGATTCTGGCTGAGAGCGTTCAATTCCTTGAACCACGAAG
CAGTTCAGCGGGTGAAAGAAATGAAGGCGGTTCTTACGGTGGAGGTCAAAAAAGTTATAGCAATAATAATAACGGAAATG
ACAACAATTCGTATGGACAAAATCCTAATCAGAATCAACGGAGCAATAACAACTACACTCGTGTAGATGATGATCCATTT
GCAAATGACGGTAAAACAATCGACATTTCAGATGACGATCTTCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.598

100

0.688
  ssb Latilactobacillus sakei subsp. sakei 23K

57.303

100

0.58
  ssb Glaesserella parasuis strain SC1401

35.294

100

0.375
  ssbB Bacillus subtilis subsp. subtilis str. 168

61.321

60.227

0.369

Multiple sequence alignment