Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACDZ08_RS01645 Genome accession   NZ_CP168014
Coordinates   369194..369697 (+) Length   167 a.a.
NCBI ID   WP_420169841.1    Uniprot ID   -
Organism   Staphylococcus aureus strain sa230627_barcode16     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 364194..374697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDZ08_RS01615 (ACDZ08_01615) - 365131..365976 (+) 846 WP_001566903.1 ParB/RepB/Spo0J family partition protein -
  ACDZ08_RS01620 (ACDZ08_01620) - 366133..367014 (+) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  ACDZ08_RS01625 (ACDZ08_01625) - 367044..367247 (+) 204 WP_000157345.1 DUF951 domain-containing protein -
  ACDZ08_RS01630 (ACDZ08_01630) ychF 367259..368356 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  ACDZ08_RS01635 (ACDZ08_01635) - 368442..368633 (-) 192 WP_001052483.1 hypothetical protein -
  ACDZ08_RS01640 (ACDZ08_01640) rpsF 368877..369173 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  ACDZ08_RS01645 (ACDZ08_01645) ssbA 369194..369697 (+) 504 WP_420169841.1 single-stranded DNA-binding protein Machinery gene
  ACDZ08_RS01650 (ACDZ08_01650) rpsR 369749..369991 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  ACDZ08_RS01655 (ACDZ08_01655) - 370257..371195 (-) 939 WP_001817700.1 Abi family protein -
  ACDZ08_RS01660 (ACDZ08_01660) - 371234..371934 (-) 701 Protein_329 tyrosine-type recombinase/integrase -
  ACDZ08_RS01665 (ACDZ08_01665) selX 372140..372751 (+) 612 WP_000473143.1 staphylococcal enterotoxin-like toxin X -
  ACDZ08_RS01670 (ACDZ08_01670) - 373120..373488 (+) 369 WP_000849163.1 YxeA family protein -
  ACDZ08_RS01675 (ACDZ08_01675) - 373669..374241 (+) 573 WP_000769722.1 PepSY domain-containing protein -
  ACDZ08_RS01680 (ACDZ08_01680) - 374379..374642 (-) 264 WP_001055897.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18567.17 Da        Isoelectric Point: 4.9327

>NTDB_id=1041226 ACDZ08_RS01645 WP_420169841.1 369194..369697(+) (ssbA) [Staphylococcus aureus strain sa230627_barcode16]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFRDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=1041226 ACDZ08_RS01645 WP_420169841.1 369194..369697(+) (ssbA) [Staphylococcus aureus strain sa230627_barcode16]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAACCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTGTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCGAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

56.069

100

0.581
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371
  ssb Glaesserella parasuis strain SC1401

34.463

100

0.365

Multiple sequence alignment