Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   KJP47_RS14870 Genome accession   NZ_OX419577
Coordinates   2744073..2744768 (-) Length   231 a.a.
NCBI ID   WP_041351757.1    Uniprot ID   -
Organism   Bacillus subtilis isolate NRS6120     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2739073..2749768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP47_RS14845 (NRS6120_15355) minD 2740009..2740815 (-) 807 WP_014664846.1 septum site-determining protein MinD -
  KJP47_RS14850 (NRS6120_15360) minC 2740817..2741497 (-) 681 WP_004398901.1 septum site-determining protein MinC -
  KJP47_RS14855 (NRS6120_15365) mreD 2741550..2742068 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  KJP47_RS14860 (NRS6120_15370) mreC 2742065..2742937 (-) 873 WP_213382144.1 rod shape-determining protein MreC -
  KJP47_RS14865 (NRS6120_15375) mreB 2742968..2743981 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  KJP47_RS14870 (NRS6120_15380) ysxA/radC 2744073..2744768 (-) 696 WP_041351757.1 DNA repair protein RadC Machinery gene
  KJP47_RS14875 (NRS6120_15385) maf 2744805..2745374 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  KJP47_RS14880 (NRS6120_15390) spoIIB 2745527..2746525 (-) 999 WP_017697540.1 stage II sporulation protein SpoIIB -
  KJP47_RS14885 (NRS6120_15395) comC 2746659..2747405 (-) 747 WP_026113741.1 A24 family peptidase Machinery gene
  KJP47_RS14890 (NRS6120_15400) folC 2747545..2748837 (-) 1293 WP_121591026.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26174.49 Da        Isoelectric Point: 7.9290

>NTDB_id=1041097 KJP47_RS14870 WP_041351757.1 2744073..2744768(-) (ysxA/radC) [Bacillus subtilis isolate NRS6120]
MVIHDLPLKLKDFPMREKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=1041097 KJP47_RS14870 WP_041351757.1 2744073..2744768(-) (ysxA/radC) [Bacillus subtilis isolate NRS6120]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAGAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACCGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCAAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGAACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

99.567

100

0.996
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424