Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABQ091_RS07470 Genome accession   NZ_CP167993
Coordinates   1727324..1727866 (+) Length   180 a.a.
NCBI ID   WP_005998344.1    Uniprot ID   F0BL56
Organism   Xanthomonas vesicatoria strain WHRI 8302     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1722324..1732866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ091_RS07455 (ABQ091_007455) murD 1723492..1724901 (+) 1410 WP_228862034.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  ABQ091_RS07460 (ABQ091_007460) - 1725070..1725870 (+) 801 WP_228862033.1 dienelactone hydrolase family protein -
  ABQ091_RS07465 (ABQ091_007465) - 1726054..1727052 (-) 999 WP_005997851.1 polyprenyl synthetase family protein -
  ABQ091_RS07470 (ABQ091_007470) ssb 1727324..1727866 (+) 543 WP_005998344.1 single-stranded DNA-binding protein Machinery gene
  ABQ091_RS07475 (ABQ091_007475) - 1728023..1729507 (-) 1485 WP_228862032.1 sensor domain-containing diguanylate cyclase -
  ABQ091_RS07480 (ABQ091_007480) - 1729815..1730822 (+) 1008 WP_228862031.1 NAD(P)-dependent alcohol dehydrogenase -
  ABQ091_RS07485 (ABQ091_007485) paoA 1731221..1731862 (+) 642 WP_228862030.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  ABQ091_RS07490 (ABQ091_007490) - 1731859..1732809 (+) 951 WP_228862029.1 xanthine dehydrogenase family protein subunit M -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19252.12 Da        Isoelectric Point: 5.3177

>NTDB_id=1040965 ABQ091_RS07470 WP_005998344.1 1727324..1727866(+) (ssb) [Xanthomonas vesicatoria strain WHRI 8302]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSQAPRQQQGGGGGGQGGGYGGGGGGQDYAPRRQQ
PAQQQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=1040965 ABQ091_RS07470 WP_005998344.1 1727324..1727866(+) (ssb) [Xanthomonas vesicatoria strain WHRI 8302]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACTCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCGACCACCAGCATGCGCAAGGATCGCGAAGGCAACAACCAGGAGCGCACCGAGTGGC
ATCGCGTGGTTTTCTTCGGGAAGCTTGGTGAAATCGCTGGTGAGTACCTGCGCAAGGGTTCGCAGGTGTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGTCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGCATGGGCGGCGATCGCCCGCAGCGCTCGCAGGCCCCGCGCCAGCAGC
AGGGCGGGGGTGGTGGCGGACAAGGCGGCGGCTACGGTGGTGGCGGTGGCGGTCAGGACTATGCCCCGCGTCGTCAACAG
CCGGCCCAGCAGCAGTCGGCACCGCCGATGGATGATTTTGCGGATGACGATATTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F0BL56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

43.939

100

0.483
  ssb Glaesserella parasuis strain SC1401

45.699

100

0.472
  ssb Neisseria meningitidis MC58

44.382

98.889

0.439
  ssb Neisseria gonorrhoeae MS11

44.382

98.889

0.439

Multiple sequence alignment