Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   KJP57_RS15375 Genome accession   NZ_OX419573
Coordinates   2897604..2898299 (-) Length   231 a.a.
NCBI ID   WP_003246034.1    Uniprot ID   Q02170
Organism   Bacillus subtilis isolate NRS6085     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2892604..2903299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KJP57_RS15350 (NRS6085_15320) minD 2893540..2894346 (-) 807 WP_213407822.1 septum site-determining protein MinD -
  KJP57_RS15355 (NRS6085_15325) minC 2894348..2895028 (-) 681 WP_029318187.1 septum site-determining protein MinC -
  KJP57_RS15360 (NRS6085_15330) mreD 2895081..2895599 (-) 519 WP_004398811.1 rod shape-determining protein MreD -
  KJP57_RS15365 (NRS6085_15335) mreC 2895596..2896468 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  KJP57_RS15370 (NRS6085_15340) mreB 2896499..2897512 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  KJP57_RS15375 (NRS6085_15345) ysxA/radC 2897604..2898299 (-) 696 WP_003246034.1 DNA repair protein RadC Machinery gene
  KJP57_RS15380 (NRS6085_15350) maf 2898336..2898905 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  KJP57_RS15385 (NRS6085_15355) spoIIB 2899058..2900056 (-) 999 WP_064670972.1 stage II sporulation protein SpoIIB -
  KJP57_RS15390 (NRS6085_15360) comC 2900190..2900936 (-) 747 WP_080474433.1 A24 family peptidase Machinery gene
  KJP57_RS15395 (NRS6085_15365) folC 2901076..2902368 (-) 1293 WP_043856952.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 26146.48 Da        Isoelectric Point: 7.9285

>NTDB_id=1040643 KJP57_RS15375 WP_003246034.1 2897604..2898299(-) (ysxA/radC) [Bacillus subtilis isolate NRS6085]
MVIHDLPLKLKDFPMKEKPRERLLKVGAENLANHELLAILLRTGTKHESVLDLSNRLLRSFDGLRLLKEASVEELSSIPG
IGMVKAIQILAAVELGSRIHKLANEEHFVIRSPEDGANLVMEDMRFLTQEHFVCLYLNTKNQVIHKRTVFIGSLNSSIVH
PREVFKEAFKRSAASFICVHNHPSGDPTPSREDIEVTRRLFECGNLIGIELLDHLVIGDKKFVSLKEKGYL

Nucleotide


Download         Length: 696 bp        

>NTDB_id=1040643 KJP57_RS15375 WP_003246034.1 2897604..2898299(-) (ysxA/radC) [Bacillus subtilis isolate NRS6085]
TTGGTCATACACGATCTGCCATTAAAACTCAAAGATTTCCCAATGAAAGAAAAGCCAAGAGAACGGCTCCTGAAAGTCGG
AGCCGAGAACTTAGCGAATCATGAACTTTTGGCTATATTATTGCGGACAGGGACTAAACACGAATCTGTTTTGGACCTGT
CAAACAGGCTGCTGCGCTCATTTGACGGGCTGCGCCTGCTCAAGGAAGCATCGGTTGAAGAGCTGTCGAGCATCCCGGGA
ATCGGTATGGTAAAAGCGATTCAAATACTGGCTGCAGTTGAGCTTGGAAGCCGGATTCATAAATTAGCCAACGAAGAACA
TTTCGTTATTCGCTCCCCGGAAGACGGCGCTAATCTTGTCATGGAGGATATGCGCTTTTTAACCCAGGAGCATTTTGTCT
GTTTATACTTAAATACAAAAAATCAAGTCATCCATAAACGCACCGTATTTATCGGAAGCCTGAATTCATCTATTGTCCAC
CCGCGAGAGGTGTTTAAAGAAGCGTTTAAACGATCTGCCGCTTCCTTTATCTGTGTTCATAATCATCCTTCTGGAGATCC
GACGCCGAGCAGGGAAGATATTGAAGTGACAAGACGGCTGTTTGAATGCGGAAACCTGATTGGCATCGAGCTGCTTGACC
ATTTGGTGATCGGGGATAAAAAATTTGTGAGTTTAAAGGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(110-229)

UPF0758 N-terminal (UPF0758_N)

(11-87)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02170

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  radC Streptococcus pneumoniae TIGR4

48.095

90.909

0.437
  radC Streptococcus pneumoniae R6

47.619

90.909

0.433
  radC Streptococcus pneumoniae D39

47.619

90.909

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

46.667

90.909

0.424

Multiple sequence alignment