Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACDW34_RS16805 Genome accession   NZ_CP167896
Coordinates   3438599..3439207 (-) Length   202 a.a.
NCBI ID   WP_174493927.1    Uniprot ID   -
Organism   Acinetobacter piscicola strain p38     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3433599..3444207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDW34_RS16775 (ACDW34_16775) - 3433677..3434552 (-) 876 WP_372403695.1 pirin family protein -
  ACDW34_RS16780 (ACDW34_16780) ycaC 3434845..3435471 (+) 627 WP_130072337.1 isochorismate family cysteine hydrolase YcaC -
  ACDW34_RS16785 (ACDW34_16785) - 3435592..3436515 (+) 924 WP_372405232.1 LysR substrate-binding domain-containing protein -
  ACDW34_RS16790 (ACDW34_16790) ahpC 3436603..3437166 (-) 564 WP_372403696.1 alkyl hydroperoxide reductase subunit C -
  ACDW34_RS16795 (ACDW34_16795) - 3437310..3437933 (-) 624 WP_372403697.1 TetR/AcrR family transcriptional regulator -
  ACDW34_RS16800 (ACDW34_16800) - 3438057..3438520 (+) 464 Protein_3263 hotdog fold domain-containing protein -
  ACDW34_RS16805 (ACDW34_16805) ssb 3438599..3439207 (-) 609 WP_174493927.1 single-stranded DNA-binding protein Machinery gene
  ACDW34_RS16810 (ACDW34_16810) - 3439259..3440623 (-) 1365 WP_130072342.1 MFS transporter -
  ACDW34_RS16815 (ACDW34_16815) - 3440761..3441843 (-) 1083 WP_130072343.1 DUF475 domain-containing protein -
  ACDW34_RS16820 (ACDW34_16820) tenA 3442122..3442796 (+) 675 WP_174493929.1 thiaminase II -
  ACDW34_RS16825 (ACDW34_16825) - 3442881..3443165 (-) 285 WP_174493930.1 YciI family protein -
  ACDW34_RS16830 (ACDW34_16830) - 3443266..3443607 (-) 342 WP_372403699.1 GlpM family protein -
  ACDW34_RS16835 (ACDW34_16835) - 3443807..3444181 (+) 375 Protein_3270 hypothetical protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22083.80 Da        Isoelectric Point: 6.4827

>NTDB_id=1040184 ACDW34_RS16805 WP_174493927.1 3438599..3439207(-) (ssb) [Acinetobacter piscicola strain p38]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSNRQQGEQGQGFGGDNGGYSQPRFNNNQQGGYGNQGNNNPGGYGNPGNQGG
YGNQGNYGNAGNNVNQGFQSPKPAAAPTPAQAPADLDDDLPF

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1040184 ACDW34_RS16805 WP_174493927.1 3438599..3439207(-) (ssb) [Acinetobacter piscicola strain p38]
ATGCGTGGTGTAAATAAAGTTATATTGGTGGGTACTCTAGGTCGTGATCCTGAGACAAAGACTTTCCCAAATGGTGGTTC
TCTCACCCAGTTTTCAATTGCAACAAGTGAGTCTTGGACAGATAAAAATACGGGTGAAAGAAAAGAACAAACAGAATGGC
ACCGTATCGTATTGCATAACCGTTTAGGTGAAATTGCACAGCAATATTTACGTAAAGGCTCAAAAGTTTATATCGAAGGT
TCATTACGTACACGTCAATGGACAGACCAAAATGGTCAAGAGCGTTACACGACTGAAATTCGTGGTGAGCAAATGCAAAT
GCTTGACTCAAATCGTCAACAAGGCGAACAAGGTCAAGGTTTTGGTGGTGACAATGGTGGTTATAGCCAGCCACGTTTTA
ACAATAATCAGCAAGGTGGCTACGGTAACCAAGGCAATAACAACCCAGGTGGTTATGGCAATCCGGGCAACCAAGGTGGC
TATGGTAACCAAGGTAACTATGGCAATGCGGGCAATAATGTAAATCAAGGTTTCCAATCACCGAAGCCAGCCGCTGCACC
AACACCTGCTCAAGCACCAGCAGATTTAGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

50.485

100

0.515
  ssb Vibrio cholerae strain A1552

41.951

100

0.426
  ssb Neisseria gonorrhoeae MS11

35.961

100

0.361

Multiple sequence alignment