Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | AB8613_RS10070 | Genome accession | NZ_CP167894 |
| Coordinates | 2220410..2221039 (+) | Length | 209 a.a. |
| NCBI ID | WP_146492434.1 | Uniprot ID | - |
| Organism | Vibrio sp. BS-M-Sm-2 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2215410..2226039
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB8613_RS10055 (AB8613_10055) | - | 2216081..2218642 (-) | 2562 | WP_372383792.1 | penicillin-binding protein 1A | - |
| AB8613_RS10060 (AB8613_10060) | pilM | 2218794..2219819 (+) | 1026 | WP_285953307.1 | type IV pilus assembly protein PilM | Machinery gene |
| AB8613_RS10065 (AB8613_10065) | pilN | 2219803..2220417 (+) | 615 | WP_372383793.1 | PilN domain-containing protein | Machinery gene |
| AB8613_RS10070 (AB8613_10070) | pilO | 2220410..2221039 (+) | 630 | WP_146492434.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| AB8613_RS10075 (AB8613_10075) | pilP | 2221026..2221544 (+) | 519 | WP_210446842.1 | pilus assembly protein PilP | Machinery gene |
| AB8613_RS10080 (AB8613_10080) | pilQ | 2221580..2223298 (+) | 1719 | WP_372383794.1 | type IV pilus secretin PilQ | Machinery gene |
| AB8613_RS10085 (AB8613_10085) | aroK | 2223475..2223993 (+) | 519 | WP_017061125.1 | shikimate kinase AroK | - |
| AB8613_RS10090 (AB8613_10090) | aroB | 2224019..2225107 (+) | 1089 | WP_017061124.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24334.84 Da Isoelectric Point: 4.6805
>NTDB_id=1040120 AB8613_RS10070 WP_146492434.1 2220410..2221039(+) (pilO) [Vibrio sp. BS-M-Sm-2]
MANLQNRISWQNRMSLQDLDVDEITEWPLLPQLLVILVLIVLIQGVGTWLYVLPLDDELQQMKQQEHTLKTTLRIKANKV
AALPKLQSQLEELTSRYDYLLEQLPVQKELASMLASVNELGLDNSLTFTRIDWGQKQNKEFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
MANLQNRISWQNRMSLQDLDVDEITEWPLLPQLLVILVLIVLIQGVGTWLYVLPLDDELQQMKQQEHTLKTTLRIKANKV
AALPKLQSQLEELTSRYDYLLEQLPVQKELASMLASVNELGLDNSLTFTRIDWGQKQNKEFLYRLPLNIELTGDYHEIGD
FSAAIAKLPRIISFDDVNWQRVSQESSTLHFRVRAYTYQFKSEVNDETQ
Nucleotide
Download Length: 630 bp
>NTDB_id=1040120 AB8613_RS10070 WP_146492434.1 2220410..2221039(+) (pilO) [Vibrio sp. BS-M-Sm-2]
ATGGCTAACCTTCAAAATAGGATTAGTTGGCAAAATAGGATGAGCTTGCAAGATCTCGATGTTGATGAGATCACCGAATG
GCCATTGTTGCCTCAGCTTCTCGTGATTCTGGTGTTGATAGTGTTAATCCAAGGTGTTGGCACTTGGCTTTATGTGCTGC
CGCTCGACGATGAACTGCAACAGATGAAGCAACAGGAGCACACCTTAAAAACGACCTTGCGAATAAAGGCGAATAAGGTT
GCAGCCTTACCTAAACTCCAGAGCCAATTAGAGGAGTTAACCAGCCGTTACGATTACTTGTTAGAGCAGCTGCCCGTTCA
AAAAGAACTGGCCAGTATGTTGGCGTCAGTGAATGAGCTCGGCTTGGATAACTCGCTGACCTTCACGCGAATTGATTGGG
GGCAAAAGCAGAACAAGGAGTTCCTCTATCGATTGCCTCTCAATATTGAGCTGACAGGTGACTATCACGAGATTGGTGAC
TTTTCTGCTGCCATCGCCAAGCTGCCGCGCATTATCAGCTTTGATGATGTGAATTGGCAGCGAGTCAGTCAAGAAAGCAG
CACGCTGCACTTTAGGGTTCGAGCTTATACCTACCAGTTTAAATCGGAGGTCAATGATGAAACCCAATAG
ATGGCTAACCTTCAAAATAGGATTAGTTGGCAAAATAGGATGAGCTTGCAAGATCTCGATGTTGATGAGATCACCGAATG
GCCATTGTTGCCTCAGCTTCTCGTGATTCTGGTGTTGATAGTGTTAATCCAAGGTGTTGGCACTTGGCTTTATGTGCTGC
CGCTCGACGATGAACTGCAACAGATGAAGCAACAGGAGCACACCTTAAAAACGACCTTGCGAATAAAGGCGAATAAGGTT
GCAGCCTTACCTAAACTCCAGAGCCAATTAGAGGAGTTAACCAGCCGTTACGATTACTTGTTAGAGCAGCTGCCCGTTCA
AAAAGAACTGGCCAGTATGTTGGCGTCAGTGAATGAGCTCGGCTTGGATAACTCGCTGACCTTCACGCGAATTGATTGGG
GGCAAAAGCAGAACAAGGAGTTCCTCTATCGATTGCCTCTCAATATTGAGCTGACAGGTGACTATCACGAGATTGGTGAC
TTTTCTGCTGCCATCGCCAAGCTGCCGCGCATTATCAGCTTTGATGATGTGAATTGGCAGCGAGTCAGTCAAGAAAGCAG
CACGCTGCACTTTAGGGTTCGAGCTTATACCTACCAGTTTAAATCGGAGGTCAATGATGAAACCCAATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio cholerae strain A1552 |
75.648 |
92.344 |
0.699 |
| pilO | Vibrio campbellii strain DS40M4 |
71.892 |
88.517 |
0.636 |