Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QUE65_RS09565 Genome accession   NZ_AP028139
Coordinates   1839192..1839632 (-) Length   146 a.a.
NCBI ID   WP_215370339.1    Uniprot ID   -
Organism   Polynucleobacter sp. HIN8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1834192..1844632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE65_RS09550 (PHIN8_18580) ilvA 1835905..1837425 (+) 1521 WP_286280879.1 threonine ammonia-lyase, biosynthetic -
  QUE65_RS09555 (PHIN8_18590) - 1837427..1838341 (+) 915 WP_215370335.1 5'-nucleotidase -
  QUE65_RS09560 (PHIN8_18600) queF 1838350..1839189 (+) 840 WP_286280880.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  QUE65_RS09565 (PHIN8_18610) ssb 1839192..1839632 (-) 441 WP_215370339.1 single-stranded DNA-binding protein Machinery gene
  QUE65_RS09570 (PHIN8_18620) - 1839674..1840837 (-) 1164 WP_286280881.1 MFS transporter -
  QUE65_RS09575 (PHIN8_18630) uvrA 1840875..1843787 (+) 2913 WP_286280882.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15964.76 Da        Isoelectric Point: 5.2957

>NTDB_id=104011 QUE65_RS09565 WP_215370339.1 1839192..1839632(-) (ssb) [Polynucleobacter sp. HIN8]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKENTEWHRIAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDQSGQEKYSTEIIADSMQMLGARMSGSGEESSGRSKPAESPSSSGASALDAMDDDIPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=104011 QUE65_RS09565 WP_215370339.1 1839192..1839632(-) (ssb) [Polynucleobacter sp. HIN8]
ATGGCTTCAGTCAATAAAGTCATCATCGTTGGTAATGTTGGGCGCGACCCAGAAACTCGGTATATGCCCAGCGGTGACGC
TGTCACCAATATTTCAGTTGCCACTTCAGATCGCTATAAAGACAAACAAACGGGCGAGATGAAAGAGAATACCGAATGGC
ATCGCATCGCCTTTTTCGGTAAGTTGGCAGAAATCGCTGGCCAATACTTAAAAAAAGGTTCACAGGTTTATGTCGAGGGT
CGCTTGCGGACTCGAAAGTGGACCGATCAAAGTGGACAAGAAAAGTATTCCACCGAAATTATCGCTGACAGCATGCAAAT
GCTTGGTGCTCGGATGTCTGGCTCTGGAGAGGAATCTTCAGGCCGCTCTAAGCCGGCTGAGAGTCCATCAAGCTCGGGAG
CCAGTGCGCTTGATGCAATGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

49.444

100

0.61
  ssb Vibrio cholerae strain A1552

61.417

86.986

0.534
  ssb Neisseria meningitidis MC58

44.253

100

0.527
  ssb Neisseria gonorrhoeae MS11

43.678

100

0.521

Multiple sequence alignment