Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACDH68_RS14170 Genome accession   NZ_CP167868
Coordinates   3261138..3261671 (-) Length   177 a.a.
NCBI ID   WP_008572410.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:3948     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3256138..3266671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDH68_RS14155 (ACDH68_14155) paoA 3256994..3257644 (-) 651 WP_372387070.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  ACDH68_RS14160 (ACDH68_14160) - 3258073..3259080 (-) 1008 WP_372387072.1 NAD(P)-dependent alcohol dehydrogenase -
  ACDH68_RS14165 (ACDH68_14165) - 3259305..3260852 (+) 1548 WP_184419901.1 sensor domain-containing diguanylate cyclase -
  ACDH68_RS14170 (ACDH68_14170) ssb 3261138..3261671 (-) 534 WP_008572410.1 single-stranded DNA-binding protein Machinery gene
  ACDH68_RS14175 (ACDH68_14175) - 3261947..3262945 (+) 999 WP_011348098.1 polyprenyl synthetase family protein -
  ACDH68_RS14180 (ACDH68_14180) - 3263158..3263958 (-) 801 WP_008572408.1 dienelactone hydrolase family protein -
  ACDH68_RS14185 (ACDH68_14185) murD 3264232..3265638 (-) 1407 WP_218555651.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18924.78 Da        Isoelectric Point: 5.3095

>NTDB_id=1040039 ACDH68_RS14170 WP_008572410.1 3261138..3261671(-) (ssb) [Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:3948]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGQGGGYGGGGGGQDYAPRRQQPAQ
QQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1040039 ACDH68_RS14170 WP_008572410.1 3261138..3261671(-) (ssb) [Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:3948]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTTTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGGTCTACGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGGATGGGCGGCGATCGCCCGCAGCGCTCGGCGCCGCGTCAGCAGGGCG
GCGGCGGTGGGCAGGGTGGTGGATACGGCGGCGGTGGCGGTGGTCAGGACTATGCGCCGCGCCGTCAGCAGCCGGCCCAG
CAGCAGTCGGCACCGCCGATGGACGATTTCGCAGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.615

100

0.492
  ssb Glaesserella parasuis strain SC1401

45.405

100

0.475
  ssb Neisseria meningitidis MC58

42.473

100

0.446
  ssb Neisseria gonorrhoeae MS11

42.473

100

0.446

Multiple sequence alignment