Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACDH70_RS19920 Genome accession   NZ_CP167865
Coordinates   4672672..4673205 (+) Length   177 a.a.
NCBI ID   WP_228962857.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:1939     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4667672..4678205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDH70_RS19905 (ACDH70_19905) murD 4668494..4669900 (+) 1407 WP_228962854.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  ACDH70_RS19910 (ACDH70_19910) - 4670399..4671199 (+) 801 WP_228962855.1 dienelactone hydrolase family protein -
  ACDH70_RS19915 (ACDH70_19915) - 4671402..4672400 (-) 999 WP_228962856.1 polyprenyl synthetase family protein -
  ACDH70_RS19920 (ACDH70_19920) ssb 4672672..4673205 (+) 534 WP_228962857.1 single-stranded DNA-binding protein Machinery gene
  ACDH70_RS19925 (ACDH70_19925) - 4673656..4674594 (-) 939 WP_228962858.1 alpha/beta fold hydrolase -
  ACDH70_RS19930 (ACDH70_19930) - 4674710..4675606 (+) 897 WP_228962859.1 LysR family transcriptional regulator -
  ACDH70_RS19935 (ACDH70_19935) - 4675751..4677109 (+) 1359 WP_228962860.1 alkyl/aryl-sulfatase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 19064.91 Da        Isoelectric Point: 5.3095

>NTDB_id=1040016 ACDH70_RS19920 WP_228962857.1 4672672..4673205(+) (ssb) [Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:1939]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSVRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGSGGMGGDRPQRSQAPRQQQGGGGQGGGGYGGGGQDYAPRRQQPAQ
QQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1040016 ACDH70_RS19920 WP_228962857.1 4672672..4673205(+) (ssb) [Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:1939]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACCACCAGCGTGCGCAAGGACCGCGACGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGTGTGGTGTTCTTCGGCAAGTTGGGCGAAATCGCCGGCGAATACCTGCGCAAGGGCTCGCAGGTCTACGTCGAAGGC
GAGCTGCGCTACGACAAGTACACCGGCCAGGATGGGGTGGAGAAGTACAGCACCGACATCGTTGCCAACGAAATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCAGTGGCGGCATGGGCGGCGACCGTCCGCAGCGCTCGCAGGCTCCGCGCCAGCAGC
AAGGTGGTGGCGGTCAGGGCGGCGGCGGATACGGCGGCGGTGGCCAGGACTATGCCCCGCGTCGTCAGCAGCCGGCCCAG
CAGCAGTCGGCTCCGCCGATGGACGATTTTGCCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.792

100

0.486
  ssb Glaesserella parasuis strain SC1401

45

100

0.458
  ssb Neisseria meningitidis MC58

44.693

100

0.452
  ssb Neisseria gonorrhoeae MS11

44.693

100

0.452

Multiple sequence alignment