Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACDH70_RS18205 Genome accession   NZ_CP167865
Coordinates   4272797..4274191 (-) Length   464 a.a.
NCBI ID   WP_228962908.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:1939     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4267797..4279191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDH70_RS18185 (ACDH70_18185) galE 4268958..4269935 (+) 978 WP_372360353.1 UDP-glucose 4-epimerase GalE -
  ACDH70_RS18190 (ACDH70_18190) pilB 4270052..4271788 (+) 1737 WP_228962907.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACDH70_RS18195 (ACDH70_18195) pilB 4271854..4271973 (+) 120 WP_029220459.1 hypothetical protein Machinery gene
  ACDH70_RS18200 (ACDH70_18200) pilB 4272039..4272158 (+) 120 WP_029220459.1 hypothetical protein Machinery gene
  ACDH70_RS18205 (ACDH70_18205) pilR 4272797..4274191 (-) 1395 WP_228962908.1 sigma-54 dependent transcriptional regulator Regulator
  ACDH70_RS18210 (ACDH70_18210) - 4274516..4276129 (-) 1614 WP_372360354.1 PAS domain-containing sensor histidine kinase -
  ACDH70_RS18215 (ACDH70_18215) sucC 4276361..4277530 (+) 1170 WP_104539102.1 ADP-forming succinate--CoA ligase subunit beta -
  ACDH70_RS18220 (ACDH70_18220) sucD 4277555..4278430 (+) 876 WP_228962716.1 succinate--CoA ligase subunit alpha -
  ACDH70_RS18225 (ACDH70_18225) - 4278523..4278735 (-) 213 WP_228962717.1 hypothetical protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50033.44 Da        Isoelectric Point: 6.2983

>NTDB_id=1040011 ACDH70_RS18205 WP_228962908.1 4272797..4274191(-) (pilR) [Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:1939]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGDSTAMEGLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTPSALDALDQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGAAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1040011 ACDH70_RS18205 WP_228962908.1 4272797..4274191(-) (pilR) [Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:1939]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGATCTCTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAACTGGTCACCGAGATCGCCAAGCAGTACCCGCAGACACCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGATCTGGCGGTGGAGGCCCTGAAGGCGGGCGCCTTCGACTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCCTGGTCAAACACGCGCTGGAATTGAACAACCGCGACCGTCCCGCCCCACCTGCGCCGC
CACCGGAGCAGGCCAGCCGCCTGCTCGGCGATTCGACGGCGATGGAAGGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGCCAGGCACCTGTCTATATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCGCGTACCATCCACGAACAGGGCGC
ACGTGCCGCCGGCCCCTTCGTGCCGGTCAACTGCGGCGCGATTCCTGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCATGCCGACAAACCCGGCCTGTTCCAGGCCGCGCATGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAACTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGTGCGATCCAGGAGAAATCGGTGCGCCCGGTCGGCGC
CTCCGGCGAAACCCTGGTGGACGTGCGCATCCTGTCGGCCACCCACAAGGACCTGGGCGACCTGGTTTCCGATGGGCGCT
TTCGGCACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAGCTGGCCGCCGCCATCATCGCGCGGCTGGCGCATAGCCACGGCCGCCCGATCCCCCTGCTCACGCCCTCCGCACTCGA
TGCGCTGGACCAGTACGGCTTTCCCGGCAACGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAGG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTGGCAGCCAGCCCCGGCGCCGCCGCA
GTCGAGCCACGCGAAGCCGTGGTCGACATCGACCCTGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAGCGTGC
CGCGATCCAGAAAGCGCTGGAGGAAAACCGCTGGAACAAGACCAAGACTGCCGCCCAATTGGGCATCACGTTCCGGGCGC
TGCGCTACAAGCTCAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.696

99.138

0.631
  pilR Acinetobacter baumannii strain A118

49.569

100

0.496

Multiple sequence alignment