Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   ACDH70_RS17610 Genome accession   NZ_CP167865
Coordinates   4124884..4125942 (+) Length   352 a.a.
NCBI ID   WP_104539994.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:1939     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4119884..4130942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDH70_RS17595 (ACDH70_17595) - 4119929..4121218 (+) 1290 WP_104539991.1 citrate synthase -
  ACDH70_RS17600 (ACDH70_17600) - 4121349..4121999 (-) 651 WP_104539992.1 hypothetical protein -
  ACDH70_RS17605 (ACDH70_17605) - 4122235..4124766 (-) 2532 WP_228964140.1 penicillin-binding protein 1A -
  ACDH70_RS17610 (ACDH70_17610) pilM 4124884..4125942 (+) 1059 WP_104539994.1 pilus assembly protein PilM Machinery gene
  ACDH70_RS17615 (ACDH70_17615) - 4125942..4126706 (+) 765 WP_228964131.1 PilN domain-containing protein -
  ACDH70_RS17620 (ACDH70_17620) - 4126703..4127368 (+) 666 WP_029220527.1 type 4a pilus biogenesis protein PilO -
  ACDH70_RS17625 (ACDH70_17625) - 4127365..4127898 (+) 534 WP_064510516.1 pilus assembly protein PilP -
  ACDH70_RS17630 (ACDH70_17630) - 4127918..4129801 (+) 1884 WP_228964130.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37593.21 Da        Isoelectric Point: 4.3967

>NTDB_id=1040005 ACDH70_RS17610 WP_104539994.1 4124884..4125942(+) (pilM) [Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:1939]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKSAAAA
VAGSAVITKLIPMPADLDESDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1040005 ACDH70_RS17610 WP_104539994.1 4124884..4125942(+) (pilM) [Xanthomonas axonopodis pv. poinsettiicola strain NCPPB:1939]
GTGGGGCTTCTACCCAAGAGTCAATCGCCACTTATCGGTGTCGATATCAGTTCCACTGCGGTCAAGCTCTTGCAGCTGTC
GCGCAGCGGGAATCGTTTTCGCGTGGAACACTACGCGGTGGAACCGTTGCCGCCGAACGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGTCGCGCCATCAACCGCTCCGGCAGCAAGGCCAAGAGTGCGGCTGCGGCC
GTGGCCGGCTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGAGAGCGATCTGGAAGCCCAGGTCGA
GCTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCCGCCTCGCGCTCGGAGAACGTGGAACTGCGCCAGTCGGCGCTGGAACTGGGC
GGGCTGACTGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTTGCCCTGGTCGCCAGCGAACTGCCGGT
GGCCGCCGATGCGGTGGTCGCGCTGGTCGACATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGCTCCGGCCGTAGCC
TGTATAGCCGCGAGCAGGTCTTCGGCGGCAAGCAGCTGACCGACGAAGTGATGCGCCGCTATGGCCTGACCTACGAAGAG
GCTGGCCTGGCCAAGCGTCAGGGTGGGTTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTACGCCGGCAGCGAGTTCAATCGCGTGGATTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGTTGGCGCGGTTGCCGGAAATGGTCGAAGAACAACTGGGCGTGACCACCGTGGTGGCCAACCCGCTCGCA
CAGATGACGCTGGGGCCGAAAGTCCAGGCCCACGCACTGGCGCTGGATGCGCCCGCCCTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

50.568

100

0.506
  comM Acinetobacter nosocomialis M2

50.568

100

0.506
  comM Acinetobacter baylyi ADP1

50.712

99.716

0.506
  pilM Legionella pneumophila strain ERS1305867

46.724

99.716

0.466

Multiple sequence alignment