Detailed information NTG1039976

Bioinformatically predicted

Overview

• Name: comM
• Type: Machinery gene
• Locus tag: ACCQ12_RS15880
• Genome accession: NZ_CP167863
• Coordinates: 3740370..3741428 (-)
• Length: 352 a.a.
• NCBI ID: WP_039409920.1
• Uniprot ID: A0AB34P8V9
• Organism: Xanthomonas sp. NCPPB 1068
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3735370..3746428

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACCQ12_RS15855 (ACCQ12_15855)	-	3736526..3738010 (-)	1485	WP_372383640.1	type IV pilus secretin PilQ	-
ACCQ12_RS15860 (ACCQ12_15860)	-	3737993..3738436 (-)	444	Protein_3101	AMIN domain-containing protein	-
ACCQ12_RS15865 (ACCQ12_15865)	-	3738426..3738959 (-)	534	WP_011038332.1	pilus assembly protein PilP	-
ACCQ12_RS15870 (ACCQ12_15870)	-	3738956..3739621 (-)	666	WP_047695637.1	type 4a pilus biogenesis protein PilO	-
ACCQ12_RS15875 (ACCQ12_15875)	-	3739618..3740370 (-)	753	WP_184438467.1	PilN domain-containing protein	-
ACCQ12_RS15880 (ACCQ12_15880)	comM	3740370..3741428 (-)	1059	WP_039409920.1	pilus assembly protein PilM	Machinery gene
ACCQ12_RS15885 (ACCQ12_15885)	-	3741548..3744070 (+)	2523	WP_372383641.1	penicillin-binding protein 1A	-
ACCQ12_RS15890 (ACCQ12_15890)	-	3744321..3744971 (+)	651	WP_372382210.1	hypothetical protein	-
ACCQ12_RS15895 (ACCQ12_15895)	-	3745102..3746391 (-)	1290	WP_039409911.1	citrate synthase	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37640.24 Da
• Isoelectric Point: 4.3924

>NTDB_id=1039976 ACCQ12_RS15880 WP_039409920.1 3740370..3741428(-) (comM) [Xanthomonas sp. NCPPB 1068]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDMEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=1039976 ACCQ12_RS15880 WP_039409920.1 3740370..3741428(-) (comM) [Xanthomonas sp. NCPPB 1068]
GTGGGGCTTCTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGATATCAGTTCCACTGCGGTCAAGCTGTTGCAGCTGTC
GCGCAGCGGGAATCGTTTCCGCGTGGAGCACTACGCGGTTGAACCGTTGCCGCCCAATGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTCGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCC
GTGGCTGGCTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGACCTGGACGACAGCGACATGGAGGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCCGCCTCGCGCTCGGAAAACGTGGAACTGCGCCAGTCGGCGCTGGAACTGGGT
GGCCTGACCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCGTTCGCCCTGGTCGCCAGCGAACTGCCGGT
CGCCGCCGATGCGGTGGTTGCGCTGGTCGACATCGGCGCCACCATGACCACGCTCAGCGTGCTGCGCTCCGGGCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTCACCGACGAAGTGATGCGCCGCTATGGCCTGACCTACGAAGAA
GCCGGCCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGTTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGTTTGCTGCAGTTCTTCTATGCGGGCAGCGAATTCAATCGTGTCGACTGCATCGTGCTGGCCGGCG
GGTGCGCCGCGCTGTCACGCCTGCCGGAGATGGTGGAAGAGCAGCTGGGCGTGACCACCGTGGTCGCCAACCCGCTCGCA
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCCGCCTTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comM	Acinetobacter baylyi ADP1	51.282	99.716	0.511
comM	Acinetobacter nosocomialis M2	51.136	100	0.511
pilM	Acinetobacter baumannii D1279779	50.852	100	0.509
pilM	Legionella pneumophila strain ERS1305867	47.578	99.716	0.474