Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QUE66_RS08340 Genome accession   NZ_AP028137
Coordinates   1682185..1682628 (-) Length   147 a.a.
NCBI ID   WP_286223575.1    Uniprot ID   -
Organism   Polynucleobacter sp. HIN6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1677185..1687628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE66_RS08325 (PHIN6_16150) ilvA 1678898..1680418 (+) 1521 WP_286223572.1 threonine ammonia-lyase, biosynthetic -
  QUE66_RS08330 (PHIN6_16160) - 1680420..1681334 (+) 915 WP_286223573.1 5'-nucleotidase -
  QUE66_RS08335 (PHIN6_16170) queF 1681343..1682182 (+) 840 WP_286223574.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  QUE66_RS08340 (PHIN6_16180) ssb 1682185..1682628 (-) 444 WP_286223575.1 single-stranded DNA-binding protein Machinery gene
  QUE66_RS08345 (PHIN6_16190) - 1682670..1683833 (-) 1164 WP_286223576.1 MFS transporter -
  QUE66_RS08350 (PHIN6_16200) uvrA 1683871..1686783 (+) 2913 WP_286223577.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16064.82 Da        Isoelectric Point: 5.2957

>NTDB_id=103990 QUE66_RS08340 WP_286223575.1 1682185..1682628(-) (ssb) [Polynucleobacter sp. HIN6]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKENTEWHRIAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDQSGQEKYSTEIIADSMQMLGARMAGSGEESSSSRSKPAEGTSSSSANALDAVDDDIPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=103990 QUE66_RS08340 WP_286223575.1 1682185..1682628(-) (ssb) [Polynucleobacter sp. HIN6]
ATGGCTTCAGTCAATAAAGTCATCATCGTTGGTAATGTTGGGCGTGACCCAGAAACACGGTATATGCCCAGCGGTGACGC
CGTCACCAATATTTCAGTAGCCACTTCAGATCGCTATAAAGATAAGCAAACAGGCGAAATGAAAGAGAACACCGAATGGC
ATCGCATTGCCTTTTTCGGTAAGTTAGCTGAAATTGCGGGTCAATATCTCAAAAAAGGTTCACAGGTTTATGTCGAGGGT
CGCTTGCGGACTCGAAAGTGGACGGATCAAAGTGGACAAGAAAAGTATTCCACTGAGATCATTGCTGACAGCATGCAAAT
GCTCGGCGCTCGAATGGCTGGCTCTGGAGAGGAATCATCAAGCAGTCGTTCTAAGCCTGCTGAGGGCACATCAAGTTCAA
GCGCAAATGCACTTGATGCAGTGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.778

100

0.585
  ssb Vibrio cholerae strain A1552

58.955

91.156

0.537
  ssb Neisseria meningitidis MC58

42.529

100

0.503
  ssb Neisseria gonorrhoeae MS11

41.954

100

0.497

Multiple sequence alignment