Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACCP99_RS05995 Genome accession   NZ_CP167849
Coordinates   1388629..1390083 (-) Length   484 a.a.
NCBI ID   WP_372356860.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 3443     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1372260..1388274 1388629..1390083 flank 355


Gene organization within MGE regions


Location: 1372260..1390083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP99_RS05940 (ACCP99_05940) - 1372260..1376303 (-) 4044 WP_372356856.1 RHS repeat-associated core domain-containing protein -
  ACCP99_RS05945 (ACCP99_05945) coaE 1376962..1377573 (-) 612 WP_277572157.1 dephospho-CoA kinase -
  ACCP99_RS05950 (ACCP99_05950) - 1377587..1378450 (-) 864 WP_003491180.1 A24 family peptidase -
  ACCP99_RS05955 (ACCP99_05955) pilC 1378457..1379719 (-) 1263 WP_069288196.1 type II secretion system F family protein Machinery gene
  ACCP99_RS05960 (ACCP99_05960) - 1379830..1381791 (-) 1962 WP_071117393.1 hypothetical protein -
  ACCP99_RS05965 (ACCP99_05965) - 1381858..1382262 (-) 405 WP_372356857.1 pilin -
  ACCP99_RS05970 (ACCP99_05970) - 1382499..1382999 (+) 501 WP_372356858.1 EamA family transporter -
  ACCP99_RS05975 (ACCP99_05975) - 1383004..1383798 (+) 795 WP_005915828.1 glycosyltransferase -
  ACCP99_RS05980 (ACCP99_05980) - 1383813..1384841 (+) 1029 WP_372356859.1 glycosyltransferase -
  ACCP99_RS05985 (ACCP99_05985) - 1384834..1385490 (+) 657 WP_157733690.1 methionine biosynthesis protein MetW -
  ACCP99_RS05990 (ACCP99_05990) pilB 1385588..1387324 (+) 1737 WP_071117396.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCP99_RS05995 (ACCP99_05995) pilR 1388629..1390083 (-) 1455 WP_372356860.1 sigma-54-dependent transcriptional regulator Regulator

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52499.29 Da        Isoelectric Point: 7.0128

>NTDB_id=1039829 ACCP99_RS05995 WP_372356860.1 1388629..1390083(-) (pilR) [Xanthomonas sp. NCPPB 3443]
MGRHLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAVPNGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGMD

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1039829 ACCP99_RS05995 WP_372356860.1 1388629..1390083(-) (pilR) [Xanthomonas sp. NCPPB 3443]
TTGGGCCGCCACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCTTGCGCATCAGCACCG
CGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGACCGACATGCGGTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACGCCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTTGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCGCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTACCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCATAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACTTGTACTAC
CGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGACGCATTGAATCACTACGGCT
TCCCAGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCTGTCCCCAACGGAGGTGCCGCGGCCGAACCGCGCGAAGCCGT
CGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAATTGGAGCGCGCCGCGATTCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGCTGCGTTACAAGTTGAAGAAG
CTGGGGATGGACTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Response regulator receiver domain (Response_reg)

(28-134)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.283

95.661

0.605
  pilR Acinetobacter baumannii strain A118

49.353

95.868

0.473

Multiple sequence alignment