Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACCQ03_RS16940 Genome accession   NZ_CP167847
Coordinates   3913997..3915055 (-) Length   352 a.a.
NCBI ID   WP_011348458.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 3569     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3908997..3920055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ03_RS16920 (ACCQ03_16920) - 3910054..3912003 (-) 1950 WP_057679439.1 type IV pilus secretin PilQ -
  ACCQ03_RS16925 (ACCQ03_16925) - 3912023..3912556 (-) 534 WP_007974439.1 pilus assembly protein PilP -
  ACCQ03_RS16930 (ACCQ03_16930) - 3912553..3913218 (-) 666 WP_017156875.1 type 4a pilus biogenesis protein PilO -
  ACCQ03_RS16935 (ACCQ03_16935) - 3913215..3913997 (-) 783 WP_209225830.1 PilN domain-containing protein -
  ACCQ03_RS16940 (ACCQ03_16940) comM 3913997..3915055 (-) 1059 WP_011348458.1 pilus assembly protein PilM Machinery gene
  ACCQ03_RS16945 (ACCQ03_16945) - 3915268..3917694 (+) 2427 WP_057679440.1 penicillin-binding protein 1A -
  ACCQ03_RS16950 (ACCQ03_16950) - 3918014..3918664 (+) 651 WP_057679441.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37606.21 Da        Isoelectric Point: 4.3924

>NTDB_id=1039819 ACCQ03_RS16940 WP_011348458.1 3913997..3915055(-) (comM) [Xanthomonas sp. NCPPB 3569]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1039819 ACCQ03_RS16940 WP_011348458.1 3913997..3915055(-) (comM) [Xanthomonas sp. NCPPB 3569]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCTGCT
GTAGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTATCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAACA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGT
GGTTTGACCGCCAAGGTGATGGACGTGGAGGCCTTTGCGGTCGAAAACGCCTTCGCACTGGTTGCCAGCGAATTGCCGGT
GGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGCCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGCGGCCTGCCGGAAAGCTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCTGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAACTGGGCGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGCCCGAAGGTCCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment