Detailed information NTG1039794

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: ACCQ05_RS05485
• Genome accession: NZ_CP167846
• Coordinates: 1300689..1302083 (-)
• Length: 464 a.a.
• NCBI ID: WP_228962908.1
• Uniprot ID: -
• Organism: Xanthomonas sp. NCPPB 3582
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	1274558..1300646	1300689..1302083	flank	43

Gene organization within MGE regions

Location: 1274558..1302083

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACCQ05_RS05370 (ACCQ05_05370)	-	1274716..1275108 (+)	393	WP_104539086.1	hypothetical protein	-
ACCQ05_RS05375 (ACCQ05_05375)	-	1275197..1275589 (+)	393	WP_064511049.1	H-NS family nucleoid-associated regulatory protein	-
ACCQ05_RS05380 (ACCQ05_05380)	glgX	1276099..1278231 (-)	2133	WP_372393148.1	glycogen debranching protein GlgX	-
ACCQ05_RS05385 (ACCQ05_05385)	rimK	1278688..1279605 (+)	918	WP_372393149.1	30S ribosomal protein S6--L-glutamate ligase	-
ACCQ05_RS05390 (ACCQ05_05390)	-	1279697..1280281 (+)	585	WP_372393150.1	hypothetical protein	-
ACCQ05_RS05395 (ACCQ05_05395)	-	1280300..1280977 (+)	678	WP_003490678.1	response regulator transcription factor	-
ACCQ05_RS05400 (ACCQ05_05400)	-	1280970..1282304 (+)	1335	WP_372393151.1	sensor histidine kinase	-
ACCQ05_RS05405 (ACCQ05_05405)	-	1282490..1282575 (+)	86	Protein_1041	IS5/IS1182 family transposase	-
ACCQ05_RS05410 (ACCQ05_05410)	-	1282627..1282839 (-)	213	WP_372393152.1	hypothetical protein	-
ACCQ05_RS05415 (ACCQ05_05415)	-	1282841..1284183 (-)	1343	Protein_1043	RHS repeat-associated core domain-containing protein	-
ACCQ05_RS05420 (ACCQ05_05420)	-	1284198..1284701 (-)	504	WP_372393154.1	hypothetical protein	-
ACCQ05_RS05425 (ACCQ05_05425)	-	1284691..1286283 (-)	1593	Protein_1045	RHS repeat domain-containing protein	-
ACCQ05_RS05430 (ACCQ05_05430)	-	1286285..1286608 (-)	324	WP_372393155.1	hypothetical protein	-
ACCQ05_RS05435 (ACCQ05_05435)	-	1286605..1291161 (-)	4557	WP_372393156.1	DUF4329 domain-containing protein	-
ACCQ05_RS05440 (ACCQ05_05440)	coaE	1291380..1292021 (-)	642	WP_228963906.1	dephospho-CoA kinase	-
ACCQ05_RS05445 (ACCQ05_05445)	-	1292035..1292898 (-)	864	WP_338339698.1	A24 family peptidase	-
ACCQ05_RS05450 (ACCQ05_05450)	pilC	1292905..1294161 (-)	1257	WP_372393157.1	type II secretion system F family protein	Machinery gene
ACCQ05_RS05455 (ACCQ05_05455)	-	1294593..1295054 (+)	462	WP_372393158.1	pilin	-
ACCQ05_RS05460 (ACCQ05_05460)	-	1295129..1295758 (+)	630	WP_372393159.1	isoprenylcysteine carboxylmethyltransferase family protein	-
ACCQ05_RS05465 (ACCQ05_05465)	-	1295797..1296888 (+)	1092	WP_372393160.1	hypothetical protein	-
ACCQ05_RS05470 (ACCQ05_05470)	pilB	1296969..1298678 (+)	1710	WP_372393943.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACCQ05_RS05475 (ACCQ05_05475)	pilB	1298744..1298863 (+)	120	WP_372393161.1	pilus assembly protein	Machinery gene
ACCQ05_RS05480 (ACCQ05_05480)	-	1300272..1300633 (+)	362	Protein_1056	transposase	-
ACCQ05_RS05485 (ACCQ05_05485)	pilR	1300689..1302083 (-)	1395	WP_228962908.1	sigma-54 dependent transcriptional regulator	Regulator

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50033.44 Da
• Isoelectric Point: 6.2983

>NTDB_id=1039794 ACCQ05_RS05485 WP_228962908.1 1300689..1302083(-) (pilR) [Xanthomonas sp. NCPPB 3582]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKQYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGDSTAMEGLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTPSALDALDQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAASPGAAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=1039794 ACCQ05_RS05485 WP_228962908.1 1300689..1302083(-) (pilR) [Xanthomonas sp. NCPPB 3582]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGATCTCTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAACTGGTCACCGAGATCGCCAAGCAGTACCCGCAGACACCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCAGTGGAAGCCCTGAAGGCGGGCGCCTTCGACTTCGTCAGCAAACCGGT
GGACATCGGCGTGCTGCGCGGCCTGGTCAAACACGCGCTGGAATTGAACAACCGCGACCGTCCCGCCCCACCTGCGCCGC
CACCGGAGCAGGCCAGCCGCCTGCTCGGCGATTCGACGGCGATGGAAGGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGCCAGGCACCTGTCTATATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCGCGTACCATCCACGAACAGGGCGC
ACGTGCCGCCGGCCCCTTCGTGCCGGTCAACTGCGGCGCGATTCCTGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCCCATGCCGACAAACCCGGCCTGTTCCAGGCCGCGCATGGCGGCACCTTGTTCCTGGAC
GAAGTGGCCGAACTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGTGCGATCCAGGAAAAATCGGTGCGCCCGGTCGGCGC
CTCCGGCGAAACCCTGGTGGACGTGCGCATCCTGTCGGCCACCCACAAGGATCTGGGCGACCTGGTTTCCGATGGGCGCT
TTCGGCACGATCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAGCTGGCCGCCGCCATCATCGCGCGGCTGGCGCATAGCCACGGCCGCCCGATCCCCCTGCTCACGCCCTCCGCACTCGA
TGCGCTGGACCAGTACGGCTTCCCCGGCAACGTCCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAGG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTGGCAGCCAGCCCCGGCGCCGCCGCA
GTCGAGCCACGCGAAGCCGTGGTCGACATCGACCCTGCCTCGGCCGCCCTACCCTCCTACATCGAACAACTGGAGCGTGC
CGCGATCCAGAAAGCGCTGGAGGAAAACCGCTGGAACAAGACCAAGACTGCCGCCCAATTGGGCATCACGTTCCGGGCGC
TGCGCTACAAGCTCAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

• Response regulator receiver domain (Response_reg) (8-114)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.696	99.138	0.631
pilR	Acinetobacter baumannii strain A118	49.569	100	0.496