Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QUE61_RS08715 Genome accession   NZ_AP028136
Coordinates   1734709..1735152 (-) Length   147 a.a.
NCBI ID   WP_286306836.1    Uniprot ID   -
Organism   Polynucleobacter sp. HIN5     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1729709..1740152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE61_RS08700 (PHIN5_16970) ilvA 1731422..1732942 (+) 1521 WP_286306833.1 threonine ammonia-lyase, biosynthetic -
  QUE61_RS08705 (PHIN5_16980) - 1732944..1733858 (+) 915 WP_286306834.1 5'-nucleotidase -
  QUE61_RS08710 (PHIN5_16990) queF 1733867..1734706 (+) 840 WP_286306835.1 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF -
  QUE61_RS08715 (PHIN5_17000) ssb 1734709..1735152 (-) 444 WP_286306836.1 single-stranded DNA-binding protein Machinery gene
  QUE61_RS08720 (PHIN5_17010) - 1735194..1736357 (-) 1164 WP_286306837.1 MFS transporter -
  QUE61_RS08725 (PHIN5_17020) uvrA 1736395..1739307 (+) 2913 WP_286306838.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 16005.81 Da        Isoelectric Point: 5.2957

>NTDB_id=103978 QUE61_RS08715 WP_286306836.1 1734709..1735152(-) (ssb) [Polynucleobacter sp. HIN5]
MASVNKVIIVGNVGRDPETRYMPSGDAVTNISVATSDRYKDKQTGEMKENTEWHRIAFFGKLAEIAGQYLKKGSQVYVEG
RLRTRKWTDQSGQEKYSTEIIADSMQMLGARMAGSGEESSGGRSKPAEGSSSPSASALDAMDDDIPF

Nucleotide


Download         Length: 444 bp        

>NTDB_id=103978 QUE61_RS08715 WP_286306836.1 1734709..1735152(-) (ssb) [Polynucleobacter sp. HIN5]
ATGGCTTCAGTCAATAAAGTCATCATCGTTGGTAATGTTGGGCGTGACCCAGAAACACGGTATATGCCCAGCGGTGACGC
CGTTACCAATATTTCAGTAGCCACTTCAGATCGCTATAAAGATAAGCAAACAGGCGAAATGAAAGAGAACACCGAATGGC
ATCGCATTGCCTTTTTCGGTAAGTTAGCTGAAATTGCGGGTCAATATCTCAAAAAGGGTTCACAGGTTTATGTCGAGGGC
CGCTTGCGGACTCGAAAGTGGACGGATCAAAGTGGACAAGAAAAGTATTCCACCGAGATCATTGCTGACAGCATGCAAAT
GCTCGGTGCACGAATGGCTGGCTCCGGAGAGGAATCGTCAGGCGGTCGTTCAAAGCCTGCGGAGGGCTCATCTAGCCCAA
GCGCTAGTGCACTCGATGCAATGGATGACGATATTCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

50.847

100

0.612
  ssb Glaesserella parasuis strain SC1401

48.333

100

0.592
  ssb Neisseria meningitidis MC58

43.103

100

0.51
  ssb Neisseria gonorrhoeae MS11

42.529

100

0.503

Multiple sequence alignment