Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACCQ01_RS17830 Genome accession   NZ_CP167840
Coordinates   4026178..4027236 (-) Length   352 a.a.
NCBI ID   WP_016944654.1    Uniprot ID   -
Organism   Xanthomonas sp. NCPPB 4037     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4021178..4032236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ01_RS17810 (ACCQ01_17810) - 4022301..4024172 (-) 1872 WP_228431136.1 type IV pilus secretin PilQ -
  ACCQ01_RS17815 (ACCQ01_17815) - 4024192..4024725 (-) 534 WP_011038332.1 pilus assembly protein PilP -
  ACCQ01_RS17820 (ACCQ01_17820) - 4024722..4025387 (-) 666 WP_011038333.1 type 4a pilus biogenesis protein PilO -
  ACCQ01_RS17825 (ACCQ01_17825) - 4025384..4026178 (-) 795 WP_228418379.1 PilN domain-containing protein -
  ACCQ01_RS17830 (ACCQ01_17830) comM 4026178..4027236 (-) 1059 WP_016944654.1 pilus assembly protein PilM Machinery gene
  ACCQ01_RS17835 (ACCQ01_17835) - 4027452..4029878 (+) 2427 WP_228431138.1 penicillin-binding protein 1A -
  ACCQ01_RS17840 (ACCQ01_17840) - 4030313..4030963 (+) 651 WP_012437499.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37620.24 Da        Isoelectric Point: 4.3924

>NTDB_id=1039751 ACCQ01_RS17830 WP_016944654.1 4026178..4027236(-) (comM) [Xanthomonas sp. NCPPB 4037]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLVAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1039751 ACCQ01_RS17830 WP_016944654.1 4026178..4027236(-) (comM) [Xanthomonas sp. NCPPB 4037]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTTATTGGTGTCGACATCAGTTCCACTGCGGTCAAGCTATTGCAGCTGTC
GCGCAGCGGAAATCGTTTTCGCGTGGAACATTACGCTGTGGAACCGTTGCCGCCGAATGCGGTGGTGGAAAAGAACATCG
TCGAAGTCGAAGCGGTGGGCGAAGCCATTCGCCGTGCCATCAACCGTTCCGGCAGCAAGGCCAAGAACGCGGCAGCGGCC
GTGGCTGGCTCGGCGGTGATCACCAAGCTGATCCCCATGCCGGCGGATCTGGACGATAGCGATCTGGAAGCCCAGGTCGA
GCTGGAAGCCACCAACTACATCCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAACA
GCCCGGACATGGTCCAGGTGCTGCTGGCGGCGTCGCGTTCGGAAAACGTCGAGCTGCGCCAATCGGCGCTGGAGCTCGGC
GGCCTGGTCGCCAAGGTGATGGACGTGGAGGCATTCGCGGTCGAGAACGCCTTTGCCCTGGTTGCCAGTGAATTGCCGGT
CGCCGCTGATGCGGTGGTGGCGCTGGTGGACATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCAGGGCGCAGCC
TGTACAGCCGCGAGCAGGTGTTCGGTGGCAAGCAGCTCACCGACGAAGTGATGCGGCGCTACGGCCTGACCTATGAGGAA
GCTGGCCTGGCCAAGCGTCAGGGCGGCCTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAACCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGCCTGTTGCAGTTCTTCTACGCGGGCAGCGAATTCAATCGCGTCGATTGCATCGTGCTGGCAGGCG
GTTGCGCGGCGTTGTCGCGCCTGCCGGAGATGGTGGAAGAACAGCTGGGCGTGACCACCGTGGTCGCCAACCCGCTGGCA
CAGATGACGCTGGGCCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  comM Acinetobacter baylyi ADP1

50.997

99.716

0.509
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment