Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACDI35_RS07780 Genome accession   NZ_CP167834
Coordinates   1786265..1786762 (+) Length   165 a.a.
NCBI ID   WP_372376233.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. cajani strain NCPPB 2063     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1781265..1791762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDI35_RS07760 (ACDI35_07750) murD 1782482..1783888 (+) 1407 WP_372376231.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  ACDI35_RS07770 (ACDI35_07760) - 1784226..1784792 (+) 567 WP_372376232.1 dienelactone hydrolase family protein -
  ACDI35_RS07775 (ACDI35_07765) - 1784993..1785991 (-) 999 WP_022558880.1 polyprenyl synthetase family protein -
  ACDI35_RS07780 (ACDI35_07770) ssb 1786265..1786762 (+) 498 WP_372376233.1 single-stranded DNA-binding protein Machinery gene
  ACDI35_RS07785 (ACDI35_07775) - 1787051..1788598 (-) 1548 WP_180996627.1 sensor domain-containing diguanylate cyclase -
  ACDI35_RS07790 (ACDI35_07780) - 1788823..1789830 (+) 1008 Protein_1517 NAD(P)-dependent alcohol dehydrogenase -
  ACDI35_RS07795 (ACDI35_07785) paoA 1790260..1790910 (+) 651 WP_022558884.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18062.96 Da        Isoelectric Point: 5.3095

>NTDB_id=1039694 ACDI35_RS07780 WP_372376233.1 1786265..1786762(+) (ssb) [Xanthomonas axonopodis pv. cajani strain NCPPB 2063]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGQDYAPRRQQPAQQQSAPPMDDFAD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=1039694 ACDI35_RS07780 WP_372376233.1 1786265..1786762(+) (ssb) [Xanthomonas axonopodis pv. cajani strain NCPPB 2063]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCCATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAGATCGCCGGCGAGTACCTTCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTCGAAAAATACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGCGAAGGCGGCGGTGGTGGGATGGGCGGCGATCGCCCGCAGCGTTCGGCGCCGCGTCAGCAGGGCG
GCGGTGGTCAGGACTACGCGCCGCGTCGTCAGCAGCCGGCCCAGCAGCAGTCGGCGCCGCCAATGGACGATTTCGCAGAC
GACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

47.541

100

0.527
  ssb Glaesserella parasuis strain SC1401

47.514

100

0.521
  ssb Neisseria meningitidis MC58

45.402

100

0.479
  ssb Neisseria gonorrhoeae MS11

45.402

100

0.479

Multiple sequence alignment