Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACCQ18_RS07325 Genome accession   NZ_CP167830
Coordinates   1641438..1641974 (+) Length   178 a.a.
NCBI ID   WP_005913267.1    Uniprot ID   A0AAW4RIS9
Organism   Xanthomonas axonopodis pv. desmodiilaxiflori strain NCPPB 3086     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1636438..1646974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ18_RS07305 (ACCQ18_07300) murD 1637424..1638830 (+) 1407 WP_005913269.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  ACCQ18_RS07315 (ACCQ18_07310) - 1639167..1639967 (+) 801 WP_005913268.1 dienelactone hydrolase family protein -
  ACCQ18_RS07320 (ACCQ18_07315) - 1640166..1641164 (-) 999 WP_003488167.1 polyprenyl synthetase family protein -
  ACCQ18_RS07325 (ACCQ18_07320) ssb 1641438..1641974 (+) 537 WP_005913267.1 single-stranded DNA-binding protein Machinery gene
  ACCQ18_RS07330 (ACCQ18_07325) - 1642260..1643807 (-) 1548 WP_170914349.1 sensor domain-containing diguanylate cyclase -
  ACCQ18_RS07335 (ACCQ18_07330) - 1644030..1645037 (+) 1008 WP_005913264.1 NAD(P)-dependent alcohol dehydrogenase -
  ACCQ18_RS07340 (ACCQ18_07335) paoA 1645461..1646111 (+) 651 WP_003488159.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18981.84 Da        Isoelectric Point: 5.3095

>NTDB_id=1039671 ACCQ18_RS07325 WP_005913267.1 1641438..1641974(+) (ssb) [Xanthomonas axonopodis pv. desmodiilaxiflori strain NCPPB 3086]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGQGGGGYGGGGGGQDYAPRRQQPA
QQQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=1039671 ACCQ18_RS07325 WP_005913267.1 1641438..1641974(+) (ssb) [Xanthomonas axonopodis pv. desmodiilaxiflori strain NCPPB 3086]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTGTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTTGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGCGAAGGCGGCGGTGGTGGGATGGGCGGCGATCGCCCGCAGCGTTCGGCGCCGCGTCAGCAGGGCG
GCGGTGGCGGGCAGGGTGGTGGCGGATATGGCGGCGGTGGCGGTGGTCAGGACTACGCGCCGCGTCGTCAGCAGCCGGCC
CAGCAGCAGTCGGCGCCGCCAATGGACGATTTCGCAGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.388

100

0.489
  ssb Glaesserella parasuis strain SC1401

44.737

100

0.478
  ssb Neisseria meningitidis MC58

44.751

100

0.455
  ssb Neisseria gonorrhoeae MS11

44.751

100

0.455

Multiple sequence alignment