Detailed information NTG1039641

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: ABRP17_RS12690
• Genome accession: NZ_CP167826
• Coordinates: 2924223..2925281 (+)
• Length: 352 a.a.
• NCBI ID: WP_342589185.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. WHRI 8082
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2919223..2930281

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABRP17_RS12675 (ABRP17_012675)	-	2920095..2920790 (+)	696	WP_188326303.1	pilus assembly protein	-
ABRP17_RS12680 (ABRP17_012680)	-	2920801..2921430 (-)	630	WP_349986167.1	hypothetical protein	-
ABRP17_RS12685 (ABRP17_012685)	-	2921584..2924004 (-)	2421	WP_188326305.1	penicillin-binding protein 1A	-
ABRP17_RS12690 (ABRP17_012690)	pilM	2924223..2925281 (+)	1059	WP_342589185.1	pilus assembly protein PilM	Machinery gene
ABRP17_RS12695 (ABRP17_012695)	-	2925281..2926105 (+)	825	WP_188326307.1	PilN domain-containing protein	-
ABRP17_RS12700 (ABRP17_012700)	-	2926102..2926788 (+)	687	WP_349986165.1	type 4a pilus biogenesis protein PilO	-
ABRP17_RS12705 (ABRP17_012705)	-	2926785..2927318 (+)	534	WP_188326309.1	pilus assembly protein PilP	-
ABRP17_RS12710 (ABRP17_012710)	-	2927340..2929319 (+)	1980	WP_349986163.1	type IV pilus secretin PilQ family protein	-
ABRP17_RS12715 (ABRP17_012715)	-	2929562..2929846 (+)	285	WP_188326311.1	YkgJ family cysteine cluster protein	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37686.34 Da
• Isoelectric Point: 4.4006

>NTDB_id=1039641 ABRP17_RS12690 WP_342589185.1 2924223..2925281(+) (pilM) [Stenotrophomonas sp. WHRI 8082]
MGLIPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAVNRSGSKAKFAAAA
VAGSAVITKVIPMPADLDESEMEAQIELEAVNYIPYPIEEVNLDFEVLGTIPNNPEMVQVLLAASRSENVELRQSALELG
GLIAKVMDVEAFAVENAFALVASELPVSSDGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRFGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALTGLPDLVEEQLGVPTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLAMRSFD

Nucleotide

• Length: 1059 bp

>NTDB_id=1039641 ABRP17_RS12690 WP_342589185.1 2924223..2925281(+) (pilM) [Stenotrophomonas sp. WHRI 8082]
GTGGGGCTCATCCCAAAAAGCCAGTCGCCGCTCATAGGCGTCGACATCAGTTCAACGGCAGTGAAACTGTTGCAGCTCTC
TCGTAGCGGCAATCGTTTCCGCGTGGAACACTATGCTGTGGAACCACTTCCGCCGAATGCGGTGGTGGAAAAGAACATCG
TGGAAGTCGAAGCGGTAGGCGAGGCGATCCGTCGCGCCGTCAACCGTTCGGGCAGCAAGGCCAAGTTCGCAGCGGCCGCC
GTGGCGGGCTCTGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGATCTGGACGAGAGCGAGATGGAGGCCCAGATCGA
ACTGGAAGCCGTCAACTACATCCCGTACCCGATCGAAGAAGTGAACCTGGACTTCGAGGTGCTCGGGACGATCCCGAACA
ACCCGGAGATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCGGAGAACGTGGAACTGCGCCAGTCGGCGCTGGAACTGGGC
GGACTGATCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTTGCCCTGGTCGCCAGCGAGCTGCCGGT
ATCCAGTGACGGCGTGGTCGCGCTGGTCGATATCGGCGCCACCATGACCACGCTGAACGTGTTGCGTGGGGGACGCAGCC
TGTACAGCCGTGAGCAGGTATTCGGTGGCAAGCAGCTGACGGACGAGATCATGCGCCGTTTCGGCCTGAGCTATGAGGAA
GCCGGACTGGCCAAGCGTCAGGGTGGGCTGCCGGAAAGCTACGAAATGGAAGTGCTGGAACCGTTCAAGGAAGCCACTGT
CCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTACGCGGGCAGCGAGTTCAATCGCGTCGATCACATCGTGCTGGCCGGCG
GCTGTGCCGCGCTGACCGGCCTGCCTGACCTGGTGGAAGAGCAGCTGGGCGTGCCGACCGTGGTGGCCAATCCCTTGGCG
CAGATGACGCTGGGCCCGAAGGTGCAGGCGCATGCGCTTGCCCTGGATGCGCCGGCGCTGATGATCGCCACCGGCCTGGC
GATGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (13-351)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Acinetobacter baumannii D1279779	51.705	100	0.517
comM	Acinetobacter nosocomialis M2	51.705	100	0.517
comM	Acinetobacter baylyi ADP1	50.284	100	0.503
pilM	Legionella pneumophila strain ERS1305867	48.148	99.716	0.48