Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABQY74_RS13835 Genome accession   NZ_CP167821
Coordinates   3221078..3221599 (-) Length   173 a.a.
NCBI ID   WP_024939378.1    Uniprot ID   A0AB73GUR8
Organism   Xanthomonas sp. WHRI 7064     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3216078..3226599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQY74_RS13820 (ABQY74_013820) paoA 3216794..3217444 (-) 651 WP_167705666.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  ABQY74_RS13825 (ABQY74_013825) - 3217995..3219002 (-) 1008 WP_102596839.1 NAD(P)-dependent alcohol dehydrogenase -
  ABQY74_RS13830 (ABQY74_013830) - 3219275..3220780 (+) 1506 WP_349791881.1 sensor domain-containing diguanylate cyclase -
  ABQY74_RS13835 (ABQY74_013835) ssb 3221078..3221599 (-) 522 WP_024939378.1 single-stranded DNA-binding protein Machinery gene
  ABQY74_RS13840 (ABQY74_013840) - 3221873..3222871 (+) 999 WP_016902370.1 polyprenyl synthetase family protein -
  ABQY74_RS13845 (ABQY74_013845) - 3223139..3223939 (-) 801 WP_047129048.1 dienelactone hydrolase family protein -
  ABQY74_RS13850 (ABQY74_013850) murD 3224099..3225508 (-) 1410 WP_349791884.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18732.61 Da        Isoelectric Point: 5.3095

>NTDB_id=1039582 ABQY74_RS13835 WP_024939378.1 3221078..3221599(-) (ssb) [Xanthomonas sp. WHRI 7064]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSQAPRQQQGGGGGGQGGGQDYAPRRQQPAQQQSA
PPMDDFADDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1039582 ABQY74_RS13835 WP_024939378.1 3221078..3221599(-) (ssb) [Xanthomonas sp. WHRI 7064]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACGCGTGTGAGTCTGGCCACCACCAGCATGCGCAAGGACCGCGATGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGCAAGTTGGGCGAGATCGCCGGCGAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
GAGCTGCGTTACGACAAGTACACCGGCCAGGACGGCGTGGAGAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGCGAAGGTGGCGGTGGCGGCATGGGCGGCGATCGTCCGCAGCGCAGCCAGGCGCCGCGCCAGCAGC
AAGGTGGAGGCGGTGGTGGTCAGGGCGGCGGTCAGGATTACGCCCCGCGTCGTCAGCAGCCGGCCCAGCAGCAGTCGGCA
CCGCCGATGGACGATTTTGCCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.486

100

0.497
  ssb Glaesserella parasuis strain SC1401

45.251

100

0.468
  ssb Neisseria meningitidis MC58

44.944

100

0.462
  ssb Neisseria gonorrhoeae MS11

44.944

100

0.462

Multiple sequence alignment