Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABQ179_RS07525 Genome accession   NZ_CP167817
Coordinates   1769090..1769611 (+) Length   173 a.a.
NCBI ID   WP_115040562.1    Uniprot ID   -
Organism   Xanthomonas dyei strain WHRI 5755     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1764090..1774611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ179_RS07510 (ABQ179_007510) murD 1765202..1766611 (+) 1410 WP_349811443.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  ABQ179_RS07515 (ABQ179_007515) - 1766813..1767613 (+) 801 WP_316687145.1 dienelactone hydrolase family protein -
  ABQ179_RS07520 (ABQ179_007520) - 1767818..1768816 (-) 999 WP_228323160.1 polyprenyl synthetase family protein -
  ABQ179_RS07525 (ABQ179_007525) ssb 1769090..1769611 (+) 522 WP_115040562.1 single-stranded DNA-binding protein Machinery gene
  ABQ179_RS07530 (ABQ179_007530) - 1769772..1771256 (-) 1485 WP_349811444.1 sensor domain-containing diguanylate cyclase -
  ABQ179_RS07535 (ABQ179_007535) - 1771569..1772576 (+) 1008 WP_104614568.1 NAD(P)-dependent alcohol dehydrogenase -
  ABQ179_RS07540 (ABQ179_007540) paoA 1772980..1773621 (+) 642 WP_170068508.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  ABQ179_RS07545 (ABQ179_007545) - 1773618..1774568 (+) 951 WP_104614570.1 xanthine dehydrogenase family protein subunit M -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18730.64 Da        Isoelectric Point: 5.3177

>NTDB_id=1039553 ABQ179_RS07525 WP_115040562.1 1769090..1769611(+) (ssb) [Xanthomonas dyei strain WHRI 5755]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRAQAPRQQQGGGGGGQGGGQDYAPRRQQPAQQQSA
PPMDDFADDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1039553 ABQ179_RS07525 WP_115040562.1 1769090..1769611(+) (ssb) [Xanthomonas dyei strain WHRI 5755]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCGACCACCAGCATGCGCAAGGATCGCGAAGGCAATAACCAGGAGCGCACCGAGTGGC
ATCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATTGCCGGTGAGTACCTGCGCAAGGGTTCGCAGGTGTATGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGTCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTTGGCGGTCGTGGTGAAGGCGGCGGCGGTGGCATGGGCGGCGATCGCCCGCAGCGCGCACAGGCCCCGCGCCAGCAGC
AGGGCGGTGGTGGTGGCGGACAGGGCGGCGGCCAGGACTACGCCCCGCGTCGCCAGCAGCCGGCCCAGCAGCAATCGGCG
CCGCCGATGGACGATTTTGCGGACGACGATATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.486

100

0.497
  ssb Glaesserella parasuis strain SC1401

45.251

100

0.468
  ssb Neisseria meningitidis MC58

44.944

100

0.462
  ssb Neisseria gonorrhoeae MS11

44.944

100

0.462

Multiple sequence alignment