Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ABQ179_RS04900 Genome accession   NZ_CP167817
Coordinates   1150483..1151541 (+) Length   352 a.a.
NCBI ID   WP_039423791.1    Uniprot ID   -
Organism   Xanthomonas dyei strain WHRI 5755     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1145483..1156541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ179_RS04890 (ABQ179_004890) - 1146695..1147342 (-) 648 WP_104617250.1 hypothetical protein -
  ABQ179_RS04895 (ABQ179_004895) - 1147838..1150267 (-) 2430 WP_349811838.1 penicillin-binding protein 1A -
  ABQ179_RS04900 (ABQ179_004900) comM 1150483..1151541 (+) 1059 WP_039423791.1 pilus assembly protein PilM Machinery gene
  ABQ179_RS04905 (ABQ179_004905) - 1151541..1152326 (+) 786 WP_104617252.1 PilN domain-containing protein -
  ABQ179_RS04910 (ABQ179_004910) - 1152323..1152988 (+) 666 WP_104617253.1 type 4a pilus biogenesis protein PilO -
  ABQ179_RS04915 (ABQ179_004915) - 1152985..1153518 (+) 534 WP_104617254.1 pilus assembly protein PilP -
  ABQ179_RS04920 (ABQ179_004920) - 1153538..1155496 (+) 1959 WP_349811837.1 type IV pilus secretin PilQ family protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37622.21 Da        Isoelectric Point: 4.3924

>NTDB_id=1039545 ABQ179_RS04900 WP_039423791.1 1150483..1151541(+) (comM) [Xanthomonas dyei strain WHRI 5755]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPNSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALSRLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1039545 ABQ179_RS04900 WP_039423791.1 1150483..1151541(+) (comM) [Xanthomonas dyei strain WHRI 5755]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTCATTGGTGTCGACATCAGTTCTACTGCCGTGAAGCTCTTGCAGCTGTC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTGGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGCCGCGCCATCAATCGCTCCGGCAGCAAGGCCAAGAACGCGGCTGCGGCC
GTGGCCGGTTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGACAGCGATCTGGAAGCTCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTGAATCTCGATTTCGAGGTGCTCGGCCCGATGCCCAATA
GCCCGGACATGGTCCAGGTGCTGCTGGCCGCCTCGCGCTCGGAGAATGTGGAGCTGCGCCAATCGGCGCTGGAACTCGGT
GGTCTGACCGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTTGCCCTGGTCGCCAGCGAACTGCCGGT
GGCTGCCGATGCGGTGGTCGCCCTGGTCGACATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGCTCTGGCCGTAGCC
TGTATAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTGATGCGCCGCTATGGCCTGACCTACGAAGAG
GCCGGCCTGGCCAAGCGTCAGGGCGGCCTGCCGGAGAGCTACGAGGTCGAAGTGCTGGAGCCGTTCAAGGAAGCGACGGT
GCAGCAGATCAGCCGTTTGCTGCAGTTCTTCTATGCGGGCAGCGAGTTCAATCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGTCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTGGGCGTGACCACCGTGGTCGCCAACCCGCTTGCG
CAGATGACGCTGGGTCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATTGCCACCGGCCTGGC
CCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter baylyi ADP1

51.282

99.716

0.511
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment