Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ACCO40_RS17860 Genome accession   NZ_CP167793
Coordinates   3486085..3486774 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus spizizenii strain SHT-15     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3481085..3491774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS17825 (ACCO40_17825) flgN 3481266..3481748 (-) 483 WP_014115348.1 flagellar protein FlgN -
  ACCO40_RS17830 (ACCO40_17830) flgM 3481763..3482029 (-) 267 WP_014115349.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACCO40_RS17835 (ACCO40_17835) - 3482109..3482528 (-) 420 WP_014115350.1 TIGR03826 family flagellar region protein -
  ACCO40_RS17840 (ACCO40_17840) comFC 3482601..3483323 (-) 723 WP_139372595.1 double zinc ribbon domain-containing protein Machinery gene
  ACCO40_RS17845 (ACCO40_17845) - 3483287..3483583 (-) 297 WP_014115352.1 late competence development ComFB family protein -
  ACCO40_RS17850 (ACCO40_17850) comFA 3483652..3485034 (-) 1383 WP_114151413.1 ATP-dependent helicase ComFA Machinery gene
  ACCO40_RS17855 (ACCO40_17855) - 3485142..3485987 (-) 846 WP_114151175.1 DegV family protein -
  ACCO40_RS17860 (ACCO40_17860) degU 3486085..3486774 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACCO40_RS17865 (ACCO40_17865) degS 3486857..3488014 (-) 1158 WP_014115355.1 two-component sensor histidine kinase DegS Regulator
  ACCO40_RS17870 (ACCO40_17870) - 3488230..3488883 (+) 654 WP_114151174.1 YigZ family protein -
  ACCO40_RS17875 (ACCO40_17875) - 3488883..3490007 (+) 1125 WP_061186931.1 LCP family protein -
  ACCO40_RS17880 (ACCO40_17880) - 3490080..3491156 (-) 1077 WP_061186932.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=1039449 ACCO40_RS17860 WP_003219701.1 3486085..3486774(-) (degU) [Bacillus spizizenii strain SHT-15]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1039449 ACCO40_RS17860 WP_003219701.1 3486085..3486774(-) (degU) [Bacillus spizizenii strain SHT-15]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGACGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCCGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATCGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCATCCGAAGGTTACTCACA
ATCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACATCCTCAGCATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACCCGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACTGTTAAAAACCATGTGAGCAATATTTTGCAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment