Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ACCO40_RS17840 Genome accession   NZ_CP167793
Coordinates   3482601..3483323 (-) Length   240 a.a.
NCBI ID   WP_139372595.1    Uniprot ID   -
Organism   Bacillus spizizenii strain SHT-15     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3477601..3488323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS17805 (ACCO40_17805) fliW 3477744..3478175 (-) 432 WP_014115344.1 flagellar assembly protein FliW -
  ACCO40_RS17810 (ACCO40_17810) - 3478196..3478771 (-) 576 WP_072565347.1 DUF6470 family protein -
  ACCO40_RS17815 (ACCO40_17815) flgL 3478818..3479714 (-) 897 WP_114151177.1 flagellar hook-associated protein FlgL -
  ACCO40_RS17820 (ACCO40_17820) flgK 3479724..3481247 (-) 1524 WP_072565349.1 flagellar hook-associated protein FlgK -
  ACCO40_RS17825 (ACCO40_17825) flgN 3481266..3481748 (-) 483 WP_014115348.1 flagellar protein FlgN -
  ACCO40_RS17830 (ACCO40_17830) flgM 3481763..3482029 (-) 267 WP_014115349.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACCO40_RS17835 (ACCO40_17835) - 3482109..3482528 (-) 420 WP_014115350.1 TIGR03826 family flagellar region protein -
  ACCO40_RS17840 (ACCO40_17840) comFC 3482601..3483323 (-) 723 WP_139372595.1 double zinc ribbon domain-containing protein Machinery gene
  ACCO40_RS17845 (ACCO40_17845) - 3483287..3483583 (-) 297 WP_014115352.1 late competence development ComFB family protein -
  ACCO40_RS17850 (ACCO40_17850) comFA 3483652..3485034 (-) 1383 WP_114151413.1 ATP-dependent helicase ComFA Machinery gene
  ACCO40_RS17855 (ACCO40_17855) - 3485142..3485987 (-) 846 WP_114151175.1 DegV family protein -
  ACCO40_RS17860 (ACCO40_17860) degU 3486085..3486774 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACCO40_RS17865 (ACCO40_17865) degS 3486857..3488014 (-) 1158 WP_014115355.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27288.71 Da        Isoelectric Point: 9.3329

>NTDB_id=1039447 ACCO40_RS17840 WP_139372595.1 3482601..3483323(-) (comFC) [Bacillus spizizenii strain SHT-15]
MPNEAGGGIYKLICLLCDSPFFQAITWRALFLLKPEEKVCHTCRSKLKKITGHICTLCGRPQSVHAVCRDCEAWKSRVSD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSQVYPDKHCVLVPIPLSKEREKERGFNQAQLLAECL
DQPIHHPLIRLNNEKQSKKKKTERLLSARIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=1039447 ACCO40_RS17840 WP_139372595.1 3482601..3483323(-) (comFC) [Bacillus spizizenii strain SHT-15]
ATGCCAAATGAAGCAGGAGGGGGCATTTATAAACTGATCTGTCTATTATGCGATTCACCATTTTTTCAAGCTATTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGAAGAAAAGGTCTGCCATACCTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCACCCTGTGCGGCAGGCCTCAATCCGTTCATGCGGTATGCAGGGATTGCGAGGCGTGGAAATCAAGAGTCAGTGAC
AGCTTGCTGCTGCGCCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCTTTTAAAAGTGATTTTTCTTCAACCTTCTCACAGGTTTACCCCGATAAGCATTGTG
TACTTGTTCCTATTCCGCTGAGCAAGGAACGGGAAAAAGAGCGCGGATTTAACCAGGCACAGCTCCTAGCAGAATGTTTA
GACCAGCCTATCCACCATCCCCTCATCCGCCTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGCCTGCTTTC
AGCGCGTATTTTTGATACAAAAAATAACTCAGCCGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCATTTTGCAGCCCGCTGTTTATTAGAGAAAGGAAAAGCCGCTTCAGTGGCATCTTTTACCTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

90

100

0.9

Multiple sequence alignment