Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ACCO40_RS17850 Genome accession   NZ_CP167793
Coordinates   3483652..3485034 (-) Length   460 a.a.
NCBI ID   WP_114151413.1    Uniprot ID   -
Organism   Bacillus spizizenii strain SHT-15     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3478652..3490034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCO40_RS17815 (ACCO40_17815) flgL 3478818..3479714 (-) 897 WP_114151177.1 flagellar hook-associated protein FlgL -
  ACCO40_RS17820 (ACCO40_17820) flgK 3479724..3481247 (-) 1524 WP_072565349.1 flagellar hook-associated protein FlgK -
  ACCO40_RS17825 (ACCO40_17825) flgN 3481266..3481748 (-) 483 WP_014115348.1 flagellar protein FlgN -
  ACCO40_RS17830 (ACCO40_17830) flgM 3481763..3482029 (-) 267 WP_014115349.1 flagellar biosynthesis anti-sigma factor FlgM -
  ACCO40_RS17835 (ACCO40_17835) - 3482109..3482528 (-) 420 WP_014115350.1 TIGR03826 family flagellar region protein -
  ACCO40_RS17840 (ACCO40_17840) comFC 3482601..3483323 (-) 723 WP_139372595.1 double zinc ribbon domain-containing protein Machinery gene
  ACCO40_RS17845 (ACCO40_17845) - 3483287..3483583 (-) 297 WP_014115352.1 late competence development ComFB family protein -
  ACCO40_RS17850 (ACCO40_17850) comFA 3483652..3485034 (-) 1383 WP_114151413.1 ATP-dependent helicase ComFA Machinery gene
  ACCO40_RS17855 (ACCO40_17855) - 3485142..3485987 (-) 846 WP_114151175.1 DegV family protein -
  ACCO40_RS17860 (ACCO40_17860) degU 3486085..3486774 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ACCO40_RS17865 (ACCO40_17865) degS 3486857..3488014 (-) 1158 WP_014115355.1 two-component sensor histidine kinase DegS Regulator
  ACCO40_RS17870 (ACCO40_17870) - 3488230..3488883 (+) 654 WP_114151174.1 YigZ family protein -
  ACCO40_RS17875 (ACCO40_17875) - 3488883..3490007 (+) 1125 WP_061186931.1 LCP family protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 51973.12 Da        Isoelectric Point: 9.7038

>NTDB_id=1039448 ACCO40_RS17850 WP_114151413.1 3483652..3485034(-) (comFA) [Bacillus spizizenii strain SHT-15]
MIVPAEKNISFSKELQQTLQSRHLLRTELPFSDKLIEWHIENGYVAAQNSISINKRGYKCNRCGQNDQQYFSFYLSSGKN
QLYCRSCVMMGRVSENVPLYSWIEEDEPNWPQIKLTWDGKLSSGQQKAANVLIDAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQCADISALYGGSDDKGCLSPLMISTTHQLLRYKGAFDVIIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPQELKRKTLNGQLYSVRIPARHHRKPLPEPRFLWCGNWKKKLYRNKIPLAVKR
WIEFHVKEGRPVFLFVPSVTVLEKAVACFKDVNCRAAAVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTIPKVQTGV
LGAESPIFTESALVQIAGRTGRHKAHADGDVIFFHYGKTKSMLDARKHIKEMNALAAKNE

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1039448 ACCO40_RS17850 WP_114151413.1 3483652..3485034(-) (comFA) [Bacillus spizizenii strain SHT-15]
CTGATTGTGCCAGCAGAAAAGAACATTTCTTTTTCAAAAGAATTGCAGCAGACGCTTCAAAGCCGTCATTTGCTCAGAAC
CGAACTCCCATTTTCCGATAAGTTGATTGAATGGCATATCGAAAATGGATATGTCGCTGCCCAAAACTCTATATCCATAA
ATAAACGGGGATATAAGTGTAATAGGTGCGGCCAAAATGATCAGCAGTATTTTTCTTTTTATCTCTCATCTGGAAAGAAT
CAGCTATATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGAATGTTCCTTTATATTCGTGGATAGAGGAGGATGA
ACCAAACTGGCCGCAAATAAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTCTTAATTG
ATGCAATATCAAAAAAAGAAGAGCTCCTCATTTGGGCTGTTTGCGGCGCTGGCAAAACAGAGATGTTATTCCCCGGTATA
GAATCCGCGTTAAATCAAGGGTTGCGTGTATGTATTGCGACACCCCGCACCGATGTAGTATTAGAGCTTGCTCCTAGACT
CAAGGCTGCCTTTCAGTGTGCTGACATTTCAGCACTTTACGGAGGAAGTGATGACAAAGGCTGTTTATCTCCGCTTATGA
TTTCTACCACACATCAGCTTTTGCGATATAAAGGGGCATTCGACGTTATAATCATTGATGAAGTTGATGCGTTTCCGTAT
TCTGCTGATCAAACACTTCAGTTCGCTGTTCAAAAAGCTAGAAAGAAAAACAGCACCCTTGTTTATTTAAGTGCAACACC
TCCTCAAGAATTAAAAAGAAAAACACTGAATGGACAGTTATATTCAGTCCGTATTCCAGCAAGACACCATCGGAAACCTT
TGCCCGAACCGCGCTTTTTATGGTGTGGAAACTGGAAAAAGAAATTATACCGAAATAAAATCCCGCTAGCGGTAAAAAGA
TGGATAGAGTTTCATGTGAAAGAAGGGAGGCCTGTTTTTTTGTTTGTTCCCTCCGTTACTGTTCTGGAAAAGGCAGTTGC
ATGCTTTAAAGATGTTAATTGCCGAGCAGCGGCAGTGCATGCGGAAGATAAACACAGAAAAGAGAAAGTACAGCAATTCA
GAGACGGTCAGCTTGATCTCTTAATCACAACAACTATATTAGAAAGAGGCGTCACGATTCCCAAGGTGCAAACGGGTGTA
TTAGGGGCGGAATCGCCTATCTTTACGGAAAGCGCACTTGTTCAAATCGCAGGAAGAACCGGGCGGCATAAAGCGCATGC
AGACGGTGATGTCATTTTCTTTCACTACGGAAAAACAAAGAGTATGCTGGATGCAAGAAAGCATATAAAAGAAATGAATG
CCTTGGCAGCAAAAAATGAATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891

Multiple sequence alignment