Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACDJ02_RS15790 Genome accession   NZ_CP167777
Coordinates   3338344..3338907 (-) Length   187 a.a.
NCBI ID   WP_004991990.1    Uniprot ID   A0A2N6VGP2
Organism   Acinetobacter ursingii strain E5131942     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3333344..3343907
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACDJ02_RS15775 (ACDJ02_15775) - 3335122..3335300 (+) 179 Protein_3061 helix-turn-helix domain-containing protein -
  ACDJ02_RS15780 (ACDJ02_15780) fic 3335503..3336618 (+) 1116 WP_372375559.1 protein adenylyltransferase Fic -
  ACDJ02_RS15785 (ACDJ02_15785) - 3336795..3337055 (+) 261 WP_372375560.1 helix-turn-helix domain-containing protein -
  ACDJ02_RS15790 (ACDJ02_15790) ssb 3338344..3338907 (-) 564 WP_004991990.1 single-stranded DNA-binding protein Machinery gene
  ACDJ02_RS15795 (ACDJ02_15795) - 3338959..3340323 (-) 1365 WP_104794758.1 MFS transporter -
  ACDJ02_RS15800 (ACDJ02_15800) - 3340467..3341546 (-) 1080 WP_104794759.1 DUF475 domain-containing protein -
  ACDJ02_RS15805 (ACDJ02_15805) tenA 3341741..3342412 (+) 672 WP_104794760.1 thiaminase II -
  ACDJ02_RS15810 (ACDJ02_15810) - 3342462..3342773 (-) 312 WP_104794761.1 hypothetical protein -
  ACDJ02_RS15815 (ACDJ02_15815) - 3342815..3343156 (-) 342 WP_104794762.1 GlpM family protein -
  ACDJ02_RS15820 (ACDJ02_15820) - 3343363..3343737 (+) 375 WP_104794763.1 hypothetical protein -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 20541.27 Da        Isoelectric Point: 6.4820

>NTDB_id=1039337 ACDJ02_RS15790 WP_004991990.1 3338344..3338907(-) (ssb) [Acinetobacter ursingii strain E5131942]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQYLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDSRQQGDQAMGGGNDFNQPRFNNAPQQSGYGQNNGSNQGNYANNSSGGYGNA
GNNNPGGFAPKAPAAPAPSDLDDDLPF

Nucleotide


Download         Length: 564 bp        

>NTDB_id=1039337 ACDJ02_RS15790 WP_004991990.1 3338344..3338907(-) (ssb) [Acinetobacter ursingii strain E5131942]
ATGCGTGGTGTGAATAAAGTAATTTTAGTTGGTACTTTAGGACGTGATCCAGAAACCAAAACTTTTCCAAATGGAGGTTC
ACTGACTCAGTTTTCAATTGCGACCAGTGAATCTTGGACAGATAAAAATACAGGTGAGCGTAAAGAGCAAACCGAATGGC
ATCGTATTGTCTTGCATAATCGTTTAGGGGAAATTGCACAGCAATATTTGCGTAAAGGATCAAAAGTTTATATTGAAGGT
TCTTTGCGTACTCGCCAGTGGACGGATCAAAACGGACAGGAACGCTATACGACTGAAATTCGTGGTGAGCAAATGCAGAT
GTTGGATTCTCGTCAGCAAGGGGATCAGGCAATGGGCGGTGGCAATGATTTTAATCAGCCACGTTTTAATAATGCTCCAC
AACAGTCTGGTTATGGTCAAAATAATGGCTCTAATCAGGGTAACTATGCCAACAATTCTTCTGGCGGTTATGGCAATGCG
GGCAACAATAATCCAGGCGGTTTTGCGCCAAAAGCACCTGCTGCCCCAGCGCCTTCCGATCTGGATGATGATTTGCCTTT
CTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N6VGP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

55.08

100

0.551
  ssb Vibrio cholerae strain A1552

45.596

100

0.471
  ssb Neisseria meningitidis MC58

39.572

100

0.396
  ssb Neisseria gonorrhoeae MS11

39.572

100

0.396

Multiple sequence alignment