Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   QUF32_RS01645 Genome accession   NZ_AP028128
Coordinates   352148..352798 (-) Length   216 a.a.
NCBI ID   WP_024374534.1    Uniprot ID   -
Organism   Vibrio fluvialis strain IDH05335     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 347148..357798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUF32_RS01635 (KKIDH5335_02830) uvrA 348191..351013 (-) 2823 WP_044364108.1 excinuclease ABC subunit UvrA -
  QUF32_RS01640 (KKIDH5335_02840) galU 351151..352020 (-) 870 WP_020433248.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QUF32_RS01645 (KKIDH5335_02850) qstR 352148..352798 (-) 651 WP_024374534.1 LuxR C-terminal-related transcriptional regulator Regulator
  QUF32_RS01650 (KKIDH5335_02860) ssb 353081..353611 (+) 531 WP_020332215.1 single-stranded DNA-binding protein Machinery gene
  QUF32_RS01655 (KKIDH5335_02870) csrD 353747..355741 (+) 1995 WP_202641329.1 RNase E specificity factor CsrD -
  QUF32_RS01660 (KKIDH5335_02880) - 355749..357197 (+) 1449 WP_286236013.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24879.67 Da        Isoelectric Point: 9.2330

>NTDB_id=103927 QUF32_RS01645 WP_024374534.1 352148..352798(-) (qstR) [Vibrio fluvialis strain IDH05335]
MQRANYARTIYYLCLDQTASAPPVLQSAFDLLAIPVPQIEPEQLLQAYQADKHKILLLNYDEHDAIRQRLAPLRLTSPHL
ETILFQVGKRLCTDDLLSFGNLKGLFYQPSEPEQIARGLAEIINGQNWLPRHVSSQLLHYYRHIFQNHHTKATIELTTRE
LQILRSLKTGASNMQMAESLFISEFTVKSHLYQIFKKLSVKNRTQAIAWANQNLLS

Nucleotide


Download         Length: 651 bp        

>NTDB_id=103927 QUF32_RS01645 WP_024374534.1 352148..352798(-) (qstR) [Vibrio fluvialis strain IDH05335]
ATGCAACGAGCTAACTACGCCCGAACCATATATTACCTCTGTCTGGATCAGACAGCTTCCGCGCCGCCTGTCCTGCAATC
GGCTTTCGACCTACTGGCAATTCCAGTTCCCCAAATCGAACCGGAGCAGTTACTGCAGGCCTATCAGGCTGACAAACATA
AAATCCTGTTACTTAATTATGACGAACATGACGCAATCCGCCAGCGGCTGGCACCACTGCGTCTGACCAGTCCGCATCTG
GAAACCATTCTGTTTCAAGTCGGCAAGCGTTTGTGTACCGACGACCTGCTCAGTTTCGGCAACCTTAAAGGCTTATTCTA
CCAACCCAGCGAGCCTGAACAGATTGCGCGTGGACTGGCAGAAATCATCAACGGCCAGAACTGGCTGCCTCGCCATGTCA
GTAGCCAACTGTTGCACTACTATCGTCACATTTTTCAGAATCACCATACCAAGGCCACCATCGAACTCACCACGCGAGAA
CTACAAATTTTGCGCAGTCTAAAAACGGGGGCATCAAATATGCAGATGGCAGAAAGCTTATTTATCAGCGAATTTACCGT
CAAATCTCACCTCTATCAGATATTCAAAAAACTCTCGGTGAAAAACCGCACCCAAGCCATCGCCTGGGCGAACCAAAACC
TGCTCTCATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

69.767

99.537

0.694
  qstR Vibrio campbellii strain DS40M4

53.456

100

0.537
  qstR Vibrio parahaemolyticus RIMD 2210633

52.535

100

0.528

Multiple sequence alignment