Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACCQ24_RS07825 Genome accession   NZ_CP167237
Coordinates   1829381..1829920 (+) Length   179 a.a.
NCBI ID   WP_218541117.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. patelii strain NCPPB 840     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1824381..1834920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ24_RS07805 (ACCQ24_07805) murD 1825366..1826772 (+) 1407 WP_372167311.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  ACCQ24_RS07815 (ACCQ24_07815) - 1827102..1827902 (+) 801 WP_008572408.1 dienelactone hydrolase family protein -
  ACCQ24_RS07820 (ACCQ24_07820) - 1828107..1829105 (-) 999 WP_218498563.1 polyprenyl synthetase family protein -
  ACCQ24_RS07825 (ACCQ24_07825) ssb 1829381..1829920 (+) 540 WP_218541117.1 single-stranded DNA-binding protein Machinery gene
  ACCQ24_RS07830 (ACCQ24_07830) - 1830206..1831690 (-) 1485 Protein_1539 sensor domain-containing diguanylate cyclase -
  ACCQ24_RS07835 (ACCQ24_07835) - 1831978..1832985 (+) 1008 WP_372167505.1 NAD(P)-dependent alcohol dehydrogenase -
  ACCQ24_RS07840 (ACCQ24_07840) paoA 1833414..1834064 (+) 651 WP_372167312.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19038.89 Da        Isoelectric Point: 5.3095

>NTDB_id=1039089 ACCQ24_RS07825 WP_218541117.1 1829381..1829920(+) (ssb) [Xanthomonas axonopodis pv. patelii strain NCPPB 840]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGQGGGYGGGGGGGGQDYAPRRQQP
AQQQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1039089 ACCQ24_RS07825 WP_218541117.1 1829381..1829920(+) (ssb) [Xanthomonas axonopodis pv. patelii strain NCPPB 840]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTTTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGGTCGCAGGTCTACGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAAAAGTACAGTACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGGATGGGCGGCGATCGCCCGCAGCGCTCGGCGCCGCGTCAGCAGGGCG
GCGGCGGTGGGCAGGGTGGTGGATACGGCGGCGGTGGCGGTGGCGGTGGTCAGGACTATGCGCCGCGCCGTCAGCAGCCG
GCCCAGCAGCAGTCGGCACCGCCGATGGACGATTTCGCAGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.162

100

0.486
  ssb Glaesserella parasuis strain SC1401

44.92

100

0.469
  ssb Neisseria meningitidis MC58

44.505

100

0.453
  ssb Neisseria gonorrhoeae MS11

44.505

100

0.453

Multiple sequence alignment