Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACCQ22_RS07810 Genome accession   NZ_CP167236
Coordinates   1829372..1829911 (+) Length   179 a.a.
NCBI ID   WP_218541117.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. desmodiirotundifolii strain NCPPB 885     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1824372..1834911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ22_RS07790 (ACCQ22_07790) murD 1825357..1826763 (+) 1407 WP_372167311.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  ACCQ22_RS07800 (ACCQ22_07800) - 1827093..1827893 (+) 801 WP_008572408.1 dienelactone hydrolase family protein -
  ACCQ22_RS07805 (ACCQ22_07805) - 1828098..1829096 (-) 999 WP_218498563.1 polyprenyl synthetase family protein -
  ACCQ22_RS07810 (ACCQ22_07810) ssb 1829372..1829911 (+) 540 WP_218541117.1 single-stranded DNA-binding protein Machinery gene
  ACCQ22_RS07815 (ACCQ22_07815) - 1830197..1831681 (-) 1485 Protein_1536 sensor domain-containing diguanylate cyclase -
  ACCQ22_RS07820 (ACCQ22_07820) - 1831969..1832976 (+) 1008 WP_372167505.1 NAD(P)-dependent alcohol dehydrogenase -
  ACCQ22_RS07825 (ACCQ22_07825) paoA 1833405..1834055 (+) 651 WP_372167312.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19038.89 Da        Isoelectric Point: 5.3095

>NTDB_id=1039072 ACCQ22_RS07810 WP_218541117.1 1829372..1829911(+) (ssb) [Xanthomonas axonopodis pv. desmodiirotundifolii strain NCPPB 885]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGQGGGYGGGGGGGGQDYAPRRQQP
AQQQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=1039072 ACCQ22_RS07810 WP_218541117.1 1829372..1829911(+) (ssb) [Xanthomonas axonopodis pv. desmodiirotundifolii strain NCPPB 885]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTTTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGGTCGCAGGTCTACGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAAAAGTACAGTACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGGATGGGCGGCGATCGCCCGCAGCGCTCGGCGCCGCGTCAGCAGGGCG
GCGGCGGTGGGCAGGGTGGTGGATACGGCGGCGGTGGCGGTGGCGGTGGTCAGGACTATGCGCCGCGCCGTCAGCAGCCG
GCCCAGCAGCAGTCGGCACCGCCGATGGACGATTTCGCAGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.162

100

0.486
  ssb Glaesserella parasuis strain SC1401

44.92

100

0.469
  ssb Neisseria meningitidis MC58

44.505

100

0.453
  ssb Neisseria gonorrhoeae MS11

44.505

100

0.453

Multiple sequence alignment