Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACCQ21_RS07380 Genome accession   NZ_CP167232
Coordinates   1706769..1707302 (+) Length   177 a.a.
NCBI ID   WP_008572410.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. desmodiigangetici strain NCPPB 577     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1701769..1712302
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ21_RS07360 (ACCQ21_07360) murD 1702761..1704167 (+) 1407 WP_014090657.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  ACCQ21_RS07370 (ACCQ21_07370) - 1704489..1705289 (+) 801 WP_372191880.1 dienelactone hydrolase family protein -
  ACCQ21_RS07375 (ACCQ21_07375) - 1705495..1706493 (-) 999 WP_008572409.1 polyprenyl synthetase family protein -
  ACCQ21_RS07380 (ACCQ21_07380) ssb 1706769..1707302 (+) 534 WP_008572410.1 single-stranded DNA-binding protein Machinery gene
  ACCQ21_RS07385 (ACCQ21_07385) - 1707588..1709072 (-) 1485 WP_122272527.1 sensor domain-containing diguanylate cyclase -
  ACCQ21_RS07390 (ACCQ21_07390) - 1709360..1710367 (+) 1008 WP_014090655.1 NAD(P)-dependent alcohol dehydrogenase -
  ACCQ21_RS07395 (ACCQ21_07395) paoA 1710796..1711446 (+) 651 WP_033478648.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18924.78 Da        Isoelectric Point: 5.3095

>NTDB_id=1039039 ACCQ21_RS07380 WP_008572410.1 1706769..1707302(+) (ssb) [Xanthomonas axonopodis pv. desmodiigangetici strain NCPPB 577]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGQGGGYGGGGGGQDYAPRRQQPAQ
QQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1039039 ACCQ21_RS07380 WP_008572410.1 1706769..1707302(+) (ssb) [Xanthomonas axonopodis pv. desmodiigangetici strain NCPPB 577]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCTACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTTTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGGTCTACGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGGATGGGCGGCGATCGCCCGCAGCGCTCGGCGCCGCGTCAGCAGGGCG
GCGGCGGTGGGCAGGGTGGTGGATACGGCGGCGGTGGCGGTGGTCAGGACTATGCGCCGCGCCGTCAGCAGCCGGCCCAG
CAGCAGTCGGCACCGCCGATGGACGATTTCGCAGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.615

100

0.492
  ssb Glaesserella parasuis strain SC1401

45.405

100

0.475
  ssb Neisseria meningitidis MC58

42.473

100

0.446
  ssb Neisseria gonorrhoeae MS11

42.473

100

0.446

Multiple sequence alignment