Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACCQ23_RS09180 Genome accession   NZ_CP167230
Coordinates   2054379..2054906 (+) Length   175 a.a.
NCBI ID   WP_017157214.1    Uniprot ID   A0A8I1XL23
Organism   Xanthomonas axonopodis pv. phyllanthi strain NCPPB 2066     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2049379..2059906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCQ23_RS09160 (ACCQ23_09160) murD 2050371..2051777 (+) 1407 WP_218553144.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  ACCQ23_RS09170 (ACCQ23_09170) - 2052099..2052899 (+) 801 WP_008572408.1 dienelactone hydrolase family protein -
  ACCQ23_RS09175 (ACCQ23_09175) - 2053105..2054103 (-) 999 WP_011348098.1 polyprenyl synthetase family protein -
  ACCQ23_RS09180 (ACCQ23_09180) ssb 2054379..2054906 (+) 528 WP_017157214.1 single-stranded DNA-binding protein Machinery gene
  ACCQ23_RS09185 (ACCQ23_09185) - 2055191..2056675 (-) 1485 Protein_1792 sensor domain-containing diguanylate cyclase -
  ACCQ23_RS09190 (ACCQ23_09190) - 2056963..2057970 (+) 1008 WP_109291348.1 NAD(P)-dependent alcohol dehydrogenase -
  ACCQ23_RS09195 (ACCQ23_09195) paoA 2058400..2059050 (+) 651 WP_372178486.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18810.68 Da        Isoelectric Point: 5.3095

>NTDB_id=1039016 ACCQ23_RS09180 WP_017157214.1 2054379..2054906(+) (ssb) [Xanthomonas axonopodis pv. phyllanthi strain NCPPB 2066]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGQGGGYGGGGQDYAPRRQQPAQQQ
SAPPMDDFADDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=1039016 ACCQ23_RS09180 WP_017157214.1 2054379..2054906(+) (ssb) [Xanthomonas axonopodis pv. phyllanthi strain NCPPB 2066]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCCACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGGTCTACGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGTGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGGATGGGCGGCGATCGCCCGCAGCGCTCGGCGCCGCGTCAGCAGGGCG
GCGGCGGTGGGCAGGGTGGTGGATACGGTGGCGGTGGTCAGGACTATGCGCCGCGCCGTCAGCAGCCGGCCCAGCAGCAG
TCGGCACCGCCGATGGACGATTTCGCAGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

45.078

100

0.497
  ssb Glaesserella parasuis strain SC1401

45.902

100

0.48
  ssb Neisseria meningitidis MC58

42.935

100

0.451
  ssb Neisseria gonorrhoeae MS11

42.935

100

0.451

Multiple sequence alignment