Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | ACCP96_RS04305 | Genome accession | NZ_CP167226 |
| Coordinates | 1014017..1015075 (+) | Length | 352 a.a. |
| NCBI ID | WP_042773967.1 | Uniprot ID | - |
| Organism | Xanthomonas campestris pv. fici strain NCPPB 3886 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 991456..1036216 | 1014017..1015075 | within | 0 |
Gene organization within MGE regions
Location: 991456..1036216
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACCP96_RS04210 (ACCP96_04210) | - | 992054..992452 (-) | 399 | WP_218534295.1 | XVIPCD domain-containing protein | - |
| ACCP96_RS04215 (ACCP96_04215) | pepQ | 992566..993891 (-) | 1326 | WP_218559559.1 | Xaa-Pro dipeptidase | - |
| ACCP96_RS04220 (ACCP96_04220) | - | 994096..994443 (-) | 348 | WP_008575819.1 | PilZ domain-containing protein | - |
| ACCP96_RS04225 (ACCP96_04225) | - | 994440..996875 (-) | 2436 | WP_372157752.1 | DUF1631 domain-containing protein | - |
| ACCP96_RS04230 (ACCP96_04230) | hemW | 997168..998325 (-) | 1158 | WP_372157755.1 | radical SAM family heme chaperone HemW | - |
| ACCP96_RS04235 (ACCP96_04235) | rdgB | 998341..998940 (-) | 600 | WP_008575822.1 | RdgB/HAM1 family non-canonical purine NTP pyrophosphatase | - |
| ACCP96_RS04240 (ACCP96_04240) | - | 998937..999329 (-) | 393 | WP_372157759.1 | VOC family protein | - |
| ACCP96_RS04245 (ACCP96_04245) | rph | 999326..1000051 (-) | 726 | WP_372157762.1 | ribonuclease PH | - |
| ACCP96_RS04250 (ACCP96_04250) | - | 1000161..1001021 (+) | 861 | WP_372157765.1 | YicC/YloC family endoribonuclease | - |
| ACCP96_RS04255 (ACCP96_04255) | gmk | 1001173..1001784 (+) | 612 | WP_008575828.1 | guanylate kinase | - |
| ACCP96_RS04260 (ACCP96_04260) | rpoZ | 1002045..1002344 (+) | 300 | WP_002812428.1 | DNA-directed RNA polymerase subunit omega | - |
| ACCP96_RS04265 (ACCP96_04265) | - | 1002472..1004643 (+) | 2172 | WP_008575831.1 | bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase | - |
| ACCP96_RS04270 (ACCP96_04270) | - | 1004723..1005103 (+) | 381 | WP_005911914.1 | RidA family protein | - |
| ACCP96_RS04275 (ACCP96_04275) | recG | 1005124..1007277 (+) | 2154 | WP_011348462.1 | ATP-dependent DNA helicase RecG | - |
| ACCP96_RS04280 (ACCP96_04280) | - | 1007400..1008338 (+) | 939 | WP_008575834.1 | nucleoside hydrolase | - |
| ACCP96_RS04285 (ACCP96_04285) | - | 1008410..1008652 (+) | 243 | WP_218559556.1 | type B 50S ribosomal protein L31 | - |
| ACCP96_RS04290 (ACCP96_04290) | - | 1008882..1010171 (+) | 1290 | WP_003486167.1 | citrate synthase | - |
| ACCP96_RS04295 (ACCP96_04295) | - | 1010418..1011068 (-) | 651 | WP_011348460.1 | hypothetical protein | - |
| ACCP96_RS04300 (ACCP96_04300) | - | 1011377..1013899 (-) | 2523 | WP_372158488.1 | penicillin-binding protein 1A | - |
| ACCP96_RS04305 (ACCP96_04305) | comM | 1014017..1015075 (+) | 1059 | WP_042773967.1 | pilus assembly protein PilM | Machinery gene |
| ACCP96_RS04310 (ACCP96_04310) | - | 1015075..1015857 (+) | 783 | WP_011348457.1 | PilN domain-containing protein | - |
| ACCP96_RS04315 (ACCP96_04315) | - | 1015854..1016519 (+) | 666 | WP_008575845.1 | type 4a pilus biogenesis protein PilO | - |
| ACCP96_RS04320 (ACCP96_04320) | - | 1016516..1017049 (+) | 534 | WP_007974439.1 | pilus assembly protein PilP | - |
| ACCP96_RS04325 (ACCP96_04325) | - | 1017069..1019018 (+) | 1950 | WP_039442081.1 | type IV pilus secretin PilQ | - |
| ACCP96_RS04330 (ACCP96_04330) | - | 1019992..1021011 (+) | 1020 | WP_372157769.1 | AAA family ATPase | - |
| ACCP96_RS04335 (ACCP96_04335) | - | 1021032..1021994 (+) | 963 | WP_011348454.1 | DUF58 domain-containing protein | - |
| ACCP96_RS04340 (ACCP96_04340) | - | 1021997..1022458 (+) | 462 | WP_372157772.1 | DUF4381 domain-containing protein | - |
| ACCP96_RS04345 (ACCP96_04345) | - | 1022455..1023471 (+) | 1017 | WP_029820181.1 | VWA domain-containing protein | - |
| ACCP96_RS04350 (ACCP96_04350) | - | 1023459..1025276 (+) | 1818 | WP_372157774.1 | VWA domain-containing protein | - |
| ACCP96_RS04355 (ACCP96_04355) | - | 1025273..1027021 (+) | 1749 | WP_372157777.1 | BatD family protein | - |
| ACCP96_RS04360 (ACCP96_04360) | - | 1027359..1028473 (+) | 1115 | WP_176558553.1 | IS3 family transposase | - |
| ACCP96_RS04365 (ACCP96_04365) | - | 1028853..1030133 (+) | 1281 | WP_031424162.1 | dicarboxylate/amino acid:cation symporter | - |
| ACCP96_RS04370 (ACCP96_04370) | tkt | 1030358..1032358 (+) | 2001 | WP_029820177.1 | transketolase | - |
| ACCP96_RS04375 (ACCP96_04375) | fhuE | 1033086..1035269 (+) | 2184 | WP_039417987.1 | ferric-rhodotorulic acid/ferric-coprogen receptor FhuE | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37579.19 Da Isoelectric Point: 4.3924
>NTDB_id=1038975 ACCP96_RS04305 WP_042773967.1 1014017..1015075(+) (comM) [Xanthomonas campestris pv. fici strain NCPPB 3886]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPSSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPSSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD
Nucleotide
Download Length: 1059 bp
>NTDB_id=1038975 ACCP96_RS04305 WP_042773967.1 1014017..1015075(+) (comM) [Xanthomonas campestris pv. fici strain NCPPB 3886]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGGCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAAAACGCGGCCGCTGCT
GTCGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTCAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAGCA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGTTTGACCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCGCTGGTTGCCAGCGAATTGCCGGT
GGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGCGGCCTGCCGGAAAGTTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGTCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGGCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAAAACGCGGCCGCTGCT
GTCGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCGTACCCGATCGAGGAAGTCAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAGCA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGTTTGACCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCGCTGGTTGCCAGCGAATTGCCGGT
GGCCGCCGATGCGGTGGTGGCGCTGGTGGATATCGGCGCGACCATGACCACGCTGAGCGTGCTGCGCTCCGGTCGCAGTC
TGTATAGCCGCGAGCAGGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGCGGCCTGCCGGAAAGTTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGTCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Acinetobacter nosocomialis M2 |
51.136 |
100 |
0.511 |
| pilM | Acinetobacter baumannii D1279779 |
50.852 |
100 |
0.509 |
| comM | Acinetobacter baylyi ADP1 |
50.857 |
99.432 |
0.506 |
| pilM | Legionella pneumophila strain ERS1305867 |
47.293 |
99.716 |
0.472 |