Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ACCP93_RS04810 Genome accession   NZ_CP167216
Coordinates   1123942..1125000 (+) Length   352 a.a.
NCBI ID   WP_042773967.1    Uniprot ID   -
Organism   Xanthomonas campestris pv. fici strain NCPPB 2372     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1118942..1130000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP93_RS04800 (ACCP93_04800) - 1120343..1120993 (-) 651 WP_011348460.1 hypothetical protein -
  ACCP93_RS04805 (ACCP93_04805) - 1121302..1123824 (-) 2523 WP_218559572.1 penicillin-binding protein 1A -
  ACCP93_RS04810 (ACCP93_04810) comM 1123942..1125000 (+) 1059 WP_042773967.1 pilus assembly protein PilM Machinery gene
  ACCP93_RS04815 (ACCP93_04815) - 1125000..1125782 (+) 783 WP_218559555.1 PilN domain-containing protein -
  ACCP93_RS04820 (ACCP93_04820) - 1125779..1126444 (+) 666 WP_008575845.1 type 4a pilus biogenesis protein PilO -
  ACCP93_RS04825 (ACCP93_04825) - 1126441..1126974 (+) 534 WP_007974439.1 pilus assembly protein PilP -
  ACCP93_RS04830 (ACCP93_04830) - 1126994..1128895 (+) 1902 WP_218539235.1 type IV pilus secretin PilQ -
  ACCP93_RS04835 (ACCP93_04835) - 1128957..1129733 (+) 777 WP_078566289.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37579.19 Da        Isoelectric Point: 4.3924

>NTDB_id=1038900 ACCP93_RS04810 WP_042773967.1 1123942..1125000(+) (comM) [Xanthomonas campestris pv. fici strain NCPPB 2372]
MGLLPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAINRSGSKAKNAAAA
VAGSAVITKLIPMPADLDDSDLEAQVELEATNYIPYPIEEVNLDFEVLGPMPSSPDMVQVLLAASRSENVELRQSALELG
GLTAKVMDVEAFAVENAFALVASELPVAADAVVALVDIGATMTTLSVLRSGRSLYSREQVFGGKQLTDEVMRRYGLTYEE
AGLAKRQGGLPESYEVEVLEPFKEATVQQISRLLQFFYAGSEFNRVDCIVLAGGCAALARLPEMVEEQLGVTTVVANPLA
QMTLGPKVQAHALALDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1038900 ACCP93_RS04810 WP_042773967.1 1123942..1125000(+) (comM) [Xanthomonas campestris pv. fici strain NCPPB 2372]
GTGGGGCTTTTACCCAAGAGTCAGTCGCCACTGATTGGTGTCGACATTAGTTCTACTGCCGTGAAGCTCTTGCAGCTATC
GCGCAGCGGGAACCGTTTTCGCGTGGAACATTACGCGGTGGAACCATTGCCGCCGAATGCGGTCGTGGAAAAGAACATCG
TCGAAGTGGAGGCGGTGGGCGAAGCCATTCGGCGCGCCATCAACCGTTCCGGCAGCAAGGCCAAAAACGCGGCCGCTGCT
GTCGCCGGGTCGGCGGTGATCACCAAGTTGATCCCGATGCCGGCCGATCTGGACGATAGCGACCTGGAAGCCCAGGTCGA
ACTGGAAGCCACCAATTACATTCCATACCCGATCGAGGAAGTCAATCTCGATTTCGAGGTGCTGGGCCCGATGCCCAGCA
GCCCGGACATGGTGCAGGTGCTGCTGGCCGCCTCGCGTTCGGAGAATGTGGAACTGCGCCAGTCGGCGCTGGAACTCGGC
GGTTTGACCGCCAAGGTCATGGACGTGGAGGCCTTCGCGGTCGAAAACGCCTTCGCGCTGGTTGCCAGCGAATTGCCGGT
GGCTGCCGATGCGGTGGTGGCGCTGGTGGACATCGGCGCCACCATGACCACGCTGAGCGTGCTGCGCTCCGGTCGCAGCC
TGTATAGCCGCGAACAGGTGTTCGGCGGCAAGCAGCTCACCGACGAAGTGATGCGCCGTTACGGGCTGACCTATGAAGAG
GCTGGCCTTGCCAAGCGTCAGGGCGGCCTGCCGGAAAGTTACGAGGTCGAGGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAGTTCTTCTATGCGGGCAGTGAGTTCAACCGCGTCGACTGCATCGTGCTGGCCGGCG
GTTGCGCCGCGCTGGCGCGCCTGCCGGAGATGGTGGAAGAGCAGCTCGGCGTGACCACGGTCGTTGCAAATCCGCTTGCC
CAGATGACGCTTGGTCCGAAGGTTCAGGCCCATGCGCTGGCGCTGGATGCGCCTGCATTGATGATCGCCACCGGCCTGGC
CCTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

51.136

100

0.511
  pilM Acinetobacter baumannii D1279779

50.852

100

0.509
  comM Acinetobacter baylyi ADP1

50.857

99.432

0.506
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment