Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACCP88_RS07575 Genome accession   NZ_CP167212
Coordinates   1700533..1701066 (+) Length   177 a.a.
NCBI ID   WP_008572410.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. cyamopsidis strain NCPPB 3758     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1695533..1706066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP88_RS07550 (ACCP88_07565) - 1696805..1697254 (-) 450 WP_003485424.1 DUF2147 domain-containing protein -
  ACCP88_RS07555 (ACCP88_07570) - 1697344..1697907 (-) 564 WP_065628527.1 hypothetical protein -
  ACCP88_RS07560 (ACCP88_07575) - 1697897..1698168 (-) 272 Protein_1471 hypothetical protein -
  ACCP88_RS07565 (ACCP88_07580) - 1698253..1699053 (+) 801 WP_372163118.1 dienelactone hydrolase family protein -
  ACCP88_RS07570 (ACCP88_07585) - 1699259..1700257 (-) 999 WP_011348098.1 polyprenyl synthetase family protein -
  ACCP88_RS07575 (ACCP88_07590) ssb 1700533..1701066 (+) 534 WP_008572410.1 single-stranded DNA-binding protein Machinery gene
  ACCP88_RS07580 (ACCP88_07595) - 1701352..1702899 (-) 1548 WP_218560231.1 sensor domain-containing diguanylate cyclase -
  ACCP88_RS07585 (ACCP88_07600) - 1703124..1704131 (+) 1008 WP_372163119.1 NAD(P)-dependent alcohol dehydrogenase -
  ACCP88_RS07590 (ACCP88_07605) paoA 1704561..1705211 (+) 651 WP_071117640.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18924.78 Da        Isoelectric Point: 5.3095

>NTDB_id=1038889 ACCP88_RS07575 WP_008572410.1 1700533..1701066(+) (ssb) [Xanthomonas axonopodis pv. cyamopsidis strain NCPPB 3758]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGQGGGYGGGGGGQDYAPRRQQPAQ
QQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1038889 ACCP88_RS07575 WP_008572410.1 1700533..1701066(+) (ssb) [Xanthomonas axonopodis pv. cyamopsidis strain NCPPB 3758]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCTACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTTTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGGTCTACGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGGATGGGCGGCGATCGCCCGCAGCGCTCGGCGCCGCGTCAGCAGGGCG
GCGGCGGTGGGCAGGGTGGTGGATACGGTGGCGGTGGCGGTGGTCAGGACTATGCGCCGCGCCGTCAGCAGCCGGCCCAG
CAGCAGTCGGCACCGCCGATGGACGATTTCGCAGACGACGATATCCCCTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.615

100

0.492
  ssb Glaesserella parasuis strain SC1401

45.405

100

0.475
  ssb Neisseria meningitidis MC58

42.473

100

0.446
  ssb Neisseria gonorrhoeae MS11

42.473

100

0.446

Multiple sequence alignment