Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ACCP88_RS05645 Genome accession   NZ_CP167212
Coordinates   1238074..1239528 (-) Length   484 a.a.
NCBI ID   WP_206212849.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. cyamopsidis strain NCPPB 3758     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1233074..1244528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP88_RS05620 (ACCP88_05640) - 1233333..1234127 (+) 795 WP_277573650.1 glycosyltransferase -
  ACCP88_RS05625 (ACCP88_05645) - 1234142..1235170 (+) 1029 WP_372162906.1 glycosyltransferase -
  ACCP88_RS05630 (ACCP88_05650) - 1235163..1235810 (+) 648 WP_277573648.1 methionine biosynthesis protein MetW -
  ACCP88_RS05635 (ACCP88_05655) pilB 1235907..1237643 (+) 1737 WP_372163326.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACCP88_RS05640 (ACCP88_05660) pilB 1237774..1237893 (+) 120 WP_029220459.1 hypothetical protein Machinery gene
  ACCP88_RS05645 (ACCP88_05665) pilR 1238074..1239528 (-) 1455 WP_206212849.1 sigma-54 dependent transcriptional regulator Regulator
  ACCP88_RS05650 (ACCP88_05670) - 1239795..1241408 (-) 1614 WP_372162909.1 ATP-binding protein -
  ACCP88_RS05655 (ACCP88_05675) sucC 1241640..1242809 (+) 1170 WP_007965356.1 ADP-forming succinate--CoA ligase subunit beta -
  ACCP88_RS05660 (ACCP88_05680) sucD 1242834..1243709 (+) 876 WP_029820064.1 succinate--CoA ligase subunit alpha -
  ACCP88_RS05665 (ACCP88_05685) - 1243881..1244095 (+) 215 Protein_1100 hypothetical protein -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 52517.30 Da        Isoelectric Point: 6.8289

>NTDB_id=1038886 ACCP88_RS05645 WP_206212849.1 1238074..1239528(-) (pilR) [Xanthomonas axonopodis pv. cyamopsidis strain NCPPB 3758]
MGRDLLDNCRPSSRWAIVRPMNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPD
GNGIELVTEIAKHYPQTPVAMITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASR
LLGDSSAMESLRATIGKVARSQAPVYIVGESGVGKELVARTIHEQGARAPGPFVPVNCGAIPAELMESEFFGHKKGSFTG
AHADKPGLFQAAHGGTLFLDEVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYY
RINVIELRVPPLRERGGDLPQLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELENILERALALAEDDQISAT
DLRLPAHGGHRLAVPNGGAAAEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKK
LGME

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=1038886 ACCP88_RS05645 WP_206212849.1 1238074..1239528(-) (pilR) [Xanthomonas axonopodis pv. cyamopsidis strain NCPPB 3758]
GTGGGCCGCGACCTGCTCGACAATTGTCGACCATCATCACGCTGGGCTATCGTGCGTCCCATGAACGAACCCAAAAGCGC
CCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCATGGGCTTGCGCATCAGCACCG
CGGCGAACCTGGCCGAGGCGCGCGAGTTGCTGGCCAACAACCCCTACGATCTGTGCCTGACCGACATGCGGTTGCCGGAC
GGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTACCCGCAGACACCGGTGGCGATGATCACCGCCTTCGGCAG
CATGGACCTGGCCGTGGAAGCGCTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGTCGACATCGGCGTGCTGCGCG
GCCTGGTCAAGCACGCGCTGGAATTGAACAATCGCGACCGTCCCGCTCCGCCACCGCCGCCACCGGAACAGGCCAGCCGC
CTGCTCGGGGACTCCAGTGCCATGGAAAGCCTGCGCGCCACCATCGGCAAGGTCGCGCGCAGCCAGGCGCCGGTCTACAT
CGTCGGCGAATCCGGCGTGGGCAAGGAACTGGTCGCACGCACCATCCACGAACAAGGCGCACGCGCCCCCGGCCCGTTCG
TGCCGGTCAACTGCGGCGCCATTCCCGCCGAATTGATGGAAAGCGAATTCTTCGGCCACAAGAAGGGCAGCTTCACCGGC
GCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCACGGCGGCACCTTGTTCCTGGACGAAGTGGCCGAATTGCCGTT
GCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAGTCGGTGCGACCGGTCGGCGCATCCAGCGAATCGCTGGTGG
ATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCTTTCGGCATGACCTGTACTAC
CGCATCAACGTAATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCGCAGCTGGCCGCTGCCATCAT
CGCGCGCCTGGCGCACAGCCATGGCCGCCCCATTCCGCTGCTGACCCAGTCGGCGCTCGACGCATTGAATCACTACGGCT
TCCCAGGCAACGTGCGCGAACTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAGACGACCAGATCAGCGCCACC
GACCTGCGCCTGCCCGCTCACGGCGGCCACCGTCTGGCTGTCCCCAACGGAGGTGCCGCGGCCGAGCCGCGCGAAGCCGT
CGTGGACATCGACCCGGCCTCAGCCGCGCTGCCGTCCTACATCGAGCAACTGGAGCGCGCCGCGATCCAGAAGGCGCTGG
AAGAAAACCGCTGGAACAAGACCAAGACTGCGGCGCAGCTGGGCATCACGTTTCGCGCGCTGCGTTACAAGTTGAAGAAG
CTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(162-327)

Bacterial regulatory protein, Fis family (HTH_8)

(441-481)

Response regulator receiver domain (Response_reg)

(28-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

95.661

0.603
  pilR Acinetobacter baumannii strain A118

49.138

95.868

0.471

Multiple sequence alignment