Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACCP84_RS14255 Genome accession   NZ_CP167201
Coordinates   3283107..3283640 (-) Length   177 a.a.
NCBI ID   WP_008572410.1    Uniprot ID   -
Organism   Xanthomonas axonopodis pv. ricini strain NCPPB 2369     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3278107..3288640
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCP84_RS14240 (ACCP84_14280) paoA 3278963..3279613 (-) 651 WP_029819880.1 aldehyde dehydrogenase iron-sulfur subunit PaoA -
  ACCP84_RS14245 (ACCP84_14285) - 3280042..3281049 (-) 1008 WP_014090655.1 NAD(P)-dependent alcohol dehydrogenase -
  ACCP84_RS14250 (ACCP84_14290) - 3281337..3282821 (+) 1485 WP_372170618.1 sensor domain-containing diguanylate cyclase -
  ACCP84_RS14255 (ACCP84_14295) ssb 3283107..3283640 (-) 534 WP_008572410.1 single-stranded DNA-binding protein Machinery gene
  ACCP84_RS14260 (ACCP84_14300) - 3283916..3284914 (+) 999 WP_011348098.1 polyprenyl synthetase family protein -
  ACCP84_RS14265 (ACCP84_14305) - 3285120..3285920 (-) 801 WP_008572408.1 dienelactone hydrolase family protein -
  ACCP84_RS14270 (ACCP84_14310) murD 3286242..3287648 (-) 1407 WP_372170624.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -

Sequence

Protein


Download         Length: 177 a.a.        Molecular weight: 18924.78 Da        Isoelectric Point: 5.3095

>NTDB_id=1038830 ACCP84_RS14255 WP_008572410.1 3283107..3283640(-) (ssb) [Xanthomonas axonopodis pv. ricini strain NCPPB 2369]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDRDGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGMGGDRPQRSAPRQQGGGGGQGGGYGGGGGGQDYAPRRQQPAQ
QQSAPPMDDFADDDIPF

Nucleotide


Download         Length: 534 bp        

>NTDB_id=1038830 ACCP84_RS14255 WP_008572410.1 3283107..3283640(-) (ssb) [Xanthomonas axonopodis pv. ricini strain NCPPB 2369]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCAATCACGCGCGTGAGCCTGGCTACCACCAGCATGCGCAAGGACCGCGACGGCAATAACCAGGAACGCACCGAGTGGC
ACCGCGTGGTGTTTTTCGGAAAGCTGGGCGAAATCGCCGGCGAGTACCTGCGCAAGGGTTCGCAGGTCTACGTCGAAGGC
GAACTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAGATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGCGGGATGGGCGGCGATCGCCCGCAGCGCTCGGCGCCGCGTCAGCAGGGCG
GCGGCGGTGGGCAGGGTGGTGGATACGGCGGCGGTGGCGGTGGTCAGGACTATGCGCCGCGCCGTCAGCAGCCGGCCCAG
CAGCAGTCGGCACCGCCGATGGACGATTTCGCAGACGACGATATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

44.615

100

0.492
  ssb Glaesserella parasuis strain SC1401

45.405

100

0.475
  ssb Neisseria meningitidis MC58

42.473

100

0.446
  ssb Neisseria gonorrhoeae MS11

42.473

100

0.446

Multiple sequence alignment