Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACBZ91_RS06825 Genome accession   NZ_CP167179
Coordinates   1449104..1449625 (+) Length   173 a.a.
NCBI ID   WP_372378574.1    Uniprot ID   -
Organism   Vibrio natriegens strain JSH01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1431561..1452344 1449104..1449625 within 0


Gene organization within MGE regions


Location: 1431561..1452344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACBZ91_RS06690 (ACBZ91_06690) - 1431561..1431911 (-) 351 WP_372378555.1 DUF4258 domain-containing protein -
  ACBZ91_RS06695 (ACBZ91_06695) - 1432230..1432604 (+) 375 WP_262637765.1 hypothetical protein -
  ACBZ91_RS06700 (ACBZ91_06700) - 1432658..1433239 (-) 582 WP_372378556.1 hypothetical protein -
  ACBZ91_RS06705 (ACBZ91_06705) - 1433500..1433682 (-) 183 WP_372378557.1 hypothetical protein -
  ACBZ91_RS06710 (ACBZ91_06710) - 1433679..1434575 (-) 897 WP_372378558.1 hypothetical protein -
  ACBZ91_RS06715 (ACBZ91_06715) - 1435041..1435379 (-) 339 WP_372378559.1 tRNA-binding protein -
  ACBZ91_RS06720 (ACBZ91_06720) - 1435576..1436289 (-) 714 WP_140054262.1 AraC family transcriptional regulator -
  ACBZ91_RS06725 (ACBZ91_06725) - 1436640..1437929 (-) 1290 WP_372378560.1 hypothetical protein -
  ACBZ91_RS06730 (ACBZ91_06730) - 1439068..1439409 (-) 342 WP_372378561.1 hypothetical protein -
  ACBZ91_RS06735 (ACBZ91_06735) - 1439739..1439981 (+) 243 WP_372378562.1 hypothetical protein -
  ACBZ91_RS06740 (ACBZ91_06740) - 1440167..1441141 (-) 975 WP_372378563.1 DUF968 domain-containing protein -
  ACBZ91_RS06745 (ACBZ91_06745) - 1441134..1441385 (-) 252 WP_276431855.1 hypothetical protein -
  ACBZ91_RS06750 (ACBZ91_06750) - 1441442..1442140 (-) 699 WP_372378564.1 phage antirepressor KilAC domain-containing protein -
  ACBZ91_RS06755 (ACBZ91_06755) - 1442134..1442346 (-) 213 WP_054867955.1 hypothetical protein -
  ACBZ91_RS06760 (ACBZ91_06760) - 1442357..1443313 (-) 957 WP_372378565.1 helix-turn-helix domain-containing protein -
  ACBZ91_RS06765 (ACBZ91_06765) - 1443313..1443834 (-) 522 WP_025500535.1 hypothetical protein -
  ACBZ91_RS06770 (ACBZ91_06770) - 1443827..1443991 (-) 165 WP_005376938.1 hypothetical protein -
  ACBZ91_RS06775 (ACBZ91_06775) - 1443991..1444260 (-) 270 WP_372378566.1 hypothetical protein -
  ACBZ91_RS06780 (ACBZ91_06780) - 1444257..1444709 (-) 453 WP_372378567.1 YmfL family putative regulatory protein -
  ACBZ91_RS06785 (ACBZ91_06785) - 1444762..1444965 (-) 204 WP_372378568.1 hypothetical protein -
  ACBZ91_RS06790 (ACBZ91_06790) - 1445003..1445785 (+) 783 WP_238802722.1 helix-turn-helix transcriptional regulator -
  ACBZ91_RS06795 (ACBZ91_06795) - 1445823..1446146 (+) 324 WP_372378569.1 hypothetical protein -
  ACBZ91_RS06800 (ACBZ91_06800) - 1446647..1447042 (+) 396 WP_005376932.1 hypothetical protein -
  ACBZ91_RS06805 (ACBZ91_06805) - 1447082..1447900 (+) 819 WP_372378570.1 DUF2303 family protein -
  ACBZ91_RS06810 (ACBZ91_06810) - 1447953..1448165 (+) 213 WP_372378571.1 hypothetical protein -
  ACBZ91_RS06815 (ACBZ91_06815) - 1448175..1448759 (+) 585 WP_372378572.1 3'-5' exonuclease -
  ACBZ91_RS06820 (ACBZ91_06820) - 1448841..1449104 (+) 264 WP_372378573.1 hypothetical protein -
  ACBZ91_RS06825 (ACBZ91_06825) ssb 1449104..1449625 (+) 522 WP_372378574.1 single-stranded DNA-binding protein Machinery gene
  ACBZ91_RS06830 (ACBZ91_06830) xisR 1449703..1449933 (+) 231 WP_014232338.1 excisionase family protein -
  ACBZ91_RS06835 (ACBZ91_06835) - 1449933..1451168 (+) 1236 WP_372378575.1 tyrosine-type recombinase/integrase -
  ACBZ91_RS06840 (ACBZ91_06840) - 1451427..1452344 (+) 918 WP_372378576.1 hypothetical protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19469.77 Da        Isoelectric Point: 6.4638

>NTDB_id=1038675 ACBZ91_RS06825 WP_372378574.1 1449104..1449625(+) (ssb) [Vibrio natriegens strain JSH01]
MASRGINKVILVGNLGNDPDVRYMPNGTAVANITVATSDSWRDKATGQQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGKRDQSWGQPKQPQQQAPQYPSNKEPNNSQYNEPPMDFDDDIPFA
PIGLQYPALLHCC

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1038675 ACBZ91_RS06825 WP_372378574.1 1449104..1449625(+) (ssb) [Vibrio natriegens strain JSH01]
ATGGCTAGCAGAGGAATTAACAAAGTTATCCTGGTTGGAAACTTAGGTAACGATCCTGACGTTCGCTATATGCCTAACGG
TACTGCAGTCGCGAACATCACTGTGGCCACCAGCGACTCTTGGCGTGACAAAGCAACAGGCCAACAACGCGAGAAGACTG
AATGGCACAGAGTCGTACTGTTTGGAAAGCTGGCTGAAGTAGCCGGTGAATATCTACGAAAAGGTTCTCAAGTTTATATT
GAGGGACAGCTGCAAACTCGCAAATGGCAAAACCAACAAGGTCAGGACCAATACACCACGGAAGTCGTCGTCCAAGGCTT
TAATGGTGTGATGCAAATGCTAGGTGGTAAGCGCGATCAAAGTTGGGGGCAACCTAAACAACCTCAACAACAAGCACCTC
AGTACCCAAGCAATAAAGAGCCAAACAACAGCCAGTATAATGAGCCACCAATGGACTTCGACGACGATATACCGTTCGCG
CCCATTGGCTTGCAATATCCGGCACTACTTCACTGCTGTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.492

100

0.711
  ssb Glaesserella parasuis strain SC1401

54.098

100

0.572
  ssb Neisseria meningitidis MC58

42.697

100

0.439
  ssb Neisseria gonorrhoeae MS11

42.373

100

0.434

Multiple sequence alignment