Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   ACB088_RS17940 Genome accession   NZ_CP167121
Coordinates   3791887..3792696 (+) Length   269 a.a.
NCBI ID   WP_375037616.1    Uniprot ID   -
Organism   Acinetobacter sp. RW6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3786887..3797696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB088_RS17905 (ACB088_17905) - 3787464..3787553 (-) 90 Protein_3489 hypothetical protein -
  ACB088_RS17910 (ACB088_17910) rpoZ 3787634..3787912 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  ACB088_RS17915 (ACB088_17915) gmk 3787985..3788614 (-) 630 WP_003653783.1 guanylate kinase -
  ACB088_RS17920 (ACB088_17920) ispH 3788737..3789687 (+) 951 WP_375037614.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACB088_RS17925 (ACB088_17925) fimU 3789860..3790333 (+) 474 WP_375037615.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACB088_RS17930 (ACB088_17930) pilV 3790327..3790886 (+) 560 Protein_3494 type IV pilus modification protein PilV -
  ACB088_RS17935 (ACB088_17935) pilW 3790886..3791890 (+) 1005 WP_133747425.1 PilW family protein Machinery gene
  ACB088_RS17940 (ACB088_17940) pilX 3791887..3792696 (+) 810 WP_375037616.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  ACB088_RS17945 (ACB088_17945) pilY1 3792708..3796562 (+) 3855 WP_375037617.1 PilC/PilY family type IV pilus protein Machinery gene
  ACB088_RS17950 (ACB088_17950) pilY2 3796573..3797055 (+) 483 WP_133747426.1 type IV pilin protein Machinery gene
  ACB088_RS17955 (ACB088_17955) pilE 3797052..3797477 (+) 426 WP_375037618.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 28531.26 Da        Isoelectric Point: 6.4753

>NTDB_id=1038314 ACB088_RS17940 WP_375037616.1 3791887..3792696(+) (pilX) [Acinetobacter sp. RW6]
MTHFIHNSKSKEKGATLIVVLIILLVVISVGVLAIRVAIVSLKVATNSQVSQLNFQSSDTPLELIVQMNPTTLTNITNVI
GAALKEHESNPGAEYNFCYKPVSTFTNFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSIPTD
AASDIPGSNLPRGTNTSEGTQLPKSMLSTQRIRVITTAFLPAYASTSIETLQSECLSTSSAKISDNFDTALTAKQTLAEC
LANHNVPFSTQVQEFNYTNKLTQITAPGS

Nucleotide


Download         Length: 810 bp        

>NTDB_id=1038314 ACB088_RS17940 WP_375037616.1 3791887..3792696(+) (pilX) [Acinetobacter sp. RW6]
ATGACCCATTTCATTCATAATAGTAAATCTAAGGAAAAAGGGGCAACCCTTATTGTTGTGCTTATTATTTTATTGGTTGT
TATTTCTGTAGGTGTTTTAGCAATAAGAGTGGCTATTGTTTCTTTAAAAGTTGCTACGAATAGCCAAGTCAGCCAATTAA
ATTTTCAGTCATCTGACACACCTTTAGAACTTATTGTGCAGATGAATCCTACCACCCTAACTAATATCACTAATGTGATT
GGCGCTGCGCTCAAAGAACACGAAAGTAACCCTGGTGCAGAATACAACTTCTGTTATAAACCTGTTTCTACGTTTACAAA
TTTTGCTCAGACTCGCGGCGCAAGTTTACTTCGGGCAGGAAGTGCTAATAATGCAGTCGTCGAAGATGGCGGGGTGGCTG
GTTTTTGTGATTTAACAAGTGACTATGGAAGTAATCGTCAAGCTGTAGTTACCCAAGTTGCTGTAAGTATTCCAACAGAT
GCTGCAAGTGATATTCCAGGTTCAAATTTACCACGAGGAACAAACACCTCTGAGGGCACTCAACTACCTAAAAGTATGCT
GTCTACACAACGTATTCGAGTGATTACAACAGCTTTTTTACCGGCCTATGCATCTACTTCTATAGAAACTTTACAAAGTG
AGTGCTTAAGCACGAGTTCAGCAAAAATTAGTGACAATTTTGATACCGCTTTAACAGCTAAGCAAACATTAGCGGAGTGT
TTGGCAAATCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTCACTCAAATTACGGCACC
AGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

88.971

100

0.9

Multiple sequence alignment