Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   ACB088_RS17925 Genome accession   NZ_CP167121
Coordinates   3789860..3790333 (+) Length   157 a.a.
NCBI ID   WP_375037615.1    Uniprot ID   -
Organism   Acinetobacter sp. RW6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3784860..3795333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB088_RS17900 (ACB088_17900) - 3785319..3787424 (-) 2106 WP_005038306.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  ACB088_RS17905 (ACB088_17905) - 3787464..3787553 (-) 90 Protein_3489 hypothetical protein -
  ACB088_RS17910 (ACB088_17910) rpoZ 3787634..3787912 (-) 279 WP_002116990.1 DNA-directed RNA polymerase subunit omega -
  ACB088_RS17915 (ACB088_17915) gmk 3787985..3788614 (-) 630 WP_003653783.1 guanylate kinase -
  ACB088_RS17920 (ACB088_17920) ispH 3788737..3789687 (+) 951 WP_375037614.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  ACB088_RS17925 (ACB088_17925) fimU 3789860..3790333 (+) 474 WP_375037615.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  ACB088_RS17930 (ACB088_17930) pilV 3790327..3790886 (+) 560 Protein_3494 type IV pilus modification protein PilV -
  ACB088_RS17935 (ACB088_17935) pilW 3790886..3791890 (+) 1005 WP_133747425.1 PilW family protein Machinery gene
  ACB088_RS17940 (ACB088_17940) pilX 3791887..3792696 (+) 810 WP_375037616.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16835.47 Da        Isoelectric Point: 8.5281

>NTDB_id=1038312 ACB088_RS17925 WP_375037615.1 3789860..3790333(+) (fimU) [Acinetobacter sp. RW6]
MRGIIPQEGFTLVELMVTIAVMAIITMMAAPSMSNLLEGKRLDGNQRDLINTLSEAKSQAILGRQDVSINLNSTASNTPT
SFNWKAASNSTLELKNVAADGTQSSLTATTLTFNANGVVSNITQDTLLSICNSKINKKKILILTKLGTLIFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1038312 ACB088_RS17925 WP_375037615.1 3789860..3790333(+) (fimU) [Acinetobacter sp. RW6]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTTGAGCTTATGGTGACGATTGCAGTAATGGCTATTATTACGAT
GATGGCTGCGCCGTCTATGTCGAATCTATTAGAAGGCAAACGACTAGATGGAAATCAACGAGACCTAATCAATACTTTGT
CGGAAGCGAAGAGCCAAGCAATACTTGGTCGACAAGATGTATCTATTAATCTGAATTCAACAGCCTCAAATACACCAACT
TCTTTCAATTGGAAAGCAGCTTCCAATAGCACTCTTGAGCTCAAAAATGTAGCTGCTGATGGTACACAGAGTTCATTAAC
AGCGACGACTTTAACTTTTAATGCGAATGGAGTGGTAAGTAATATTACCCAAGATACACTTTTATCTATTTGTAATTCAA
AAATAAATAAAAAGAAAATTCTTATTTTAACAAAGCTTGGCACATTAATTTTTAAAGCTGAGGAGACATGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

88.535

100

0.885

Multiple sequence alignment