Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACB088_RS17285 Genome accession   NZ_CP167121
Coordinates   3664489..3665085 (+) Length   198 a.a.
NCBI ID   WP_132070563.1    Uniprot ID   -
Organism   Acinetobacter sp. RW6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3659489..3670085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB088_RS17260 (ACB088_17260) - 3659559..3660365 (-) 807 WP_375037550.1 SDR family NAD(P)-dependent oxidoreductase -
  ACB088_RS17265 (ACB088_17265) - 3660468..3660839 (-) 372 WP_133747351.1 MerR family transcriptional regulator -
  ACB088_RS17270 (ACB088_17270) tenA 3660906..3661580 (-) 675 WP_133747352.1 thiaminase II -
  ACB088_RS17275 (ACB088_17275) - 3661843..3662925 (+) 1083 WP_375037551.1 DUF475 domain-containing protein -
  ACB088_RS17280 (ACB088_17280) - 3663073..3664437 (+) 1365 WP_375037552.1 MFS transporter -
  ACB088_RS17285 (ACB088_17285) ssb 3664489..3665085 (+) 597 WP_132070563.1 single-stranded DNA-binding protein Machinery gene
  ACB088_RS17290 (ACB088_17290) - 3665130..3665453 (-) 324 WP_375037553.1 AzlD domain-containing protein -
  ACB088_RS17295 (ACB088_17295) - 3665450..3666145 (-) 696 WP_375037554.1 AzlC family ABC transporter permease -
  ACB088_RS17300 (ACB088_17300) - 3666214..3666762 (+) 549 WP_017388639.1 helix-turn-helix domain-containing protein -
  ACB088_RS17305 (ACB088_17305) - 3667089..3668531 (+) 1443 WP_003653993.1 amino acid permease -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21510.28 Da        Isoelectric Point: 6.4832

>NTDB_id=1038305 ACB088_RS17285 WP_132070563.1 3664489..3665085(+) (ssb) [Acinetobacter sp. RW6]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSEAWTDKTSGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGEQMQMLDGRQQGEQGFAGGNDFNQPRFNAPQQGGNGYQNNNNQGGGYNQNSGGGYGSN
PAGFGNGGNSNPQSGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1038305 ACB088_RS17285 WP_132070563.1 3664489..3665085(+) (ssb) [Acinetobacter sp. RW6]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGTTC
GCTGACTCAATTTTCAATCGCGACAAGTGAAGCTTGGACCGATAAAACTTCAGGTGAGCGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTCTTACGTAAAGGTTCTAAGGTTTATATTGAAGGT
TCATTACGCACGCGTCAGTGGACTGATCAAAATGGCCAAGAGCGCTATACAACAGAAATTCGTGGCGAACAGATGCAAAT
GTTAGATGGTCGTCAACAAGGTGAACAAGGGTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGTAATGGTTATCAAAATAATAATAACCAAGGCGGTGGTTATAACCAAAATAGTGGCGGTGGCTATGGTAGCAAC
CCAGCTGGTTTTGGTAATGGTGGAAACAGTAACCCGCAATCTGGTGGTTTTGCTCCTAAAGCACCACAACAGCCTGCGTC
TGCACCAGCTGATTTAGACGACGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.077

100

0.505
  ssb Vibrio cholerae strain A1552

42.512

100

0.444
  ssb Neisseria gonorrhoeae MS11

36.408

100

0.379
  ssb Neisseria meningitidis MC58

37.755

98.99

0.374

Multiple sequence alignment