Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ACB088_RS13285 Genome accession   NZ_CP167121
Coordinates   2807597..2808001 (-) Length   134 a.a.
NCBI ID   WP_375037196.1    Uniprot ID   -
Organism   Acinetobacter sp. RW6     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2802597..2813001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB088_RS13255 (ACB088_13255) - 2802680..2802949 (-) 270 WP_013198928.1 HPr family phosphocarrier protein -
  ACB088_RS13260 (ACB088_13260) rapZ 2802946..2803797 (-) 852 WP_003655028.1 RNase adapter RapZ -
  ACB088_RS13265 (ACB088_13265) panC 2803821..2804669 (-) 849 WP_005036795.1 pantoate--beta-alanine ligase -
  ACB088_RS13270 (ACB088_13270) panB 2804673..2805482 (-) 810 WP_003655024.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  ACB088_RS13275 (ACB088_13275) folK 2805529..2806011 (-) 483 WP_199990098.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  ACB088_RS13280 (ACB088_13280) pcnB 2806008..2807471 (-) 1464 WP_309951958.1 polynucleotide adenylyltransferase PcnB -
  ACB088_RS13285 (ACB088_13285) comEA 2807597..2808001 (-) 405 WP_375037196.1 ComEA family DNA-binding protein Machinery gene
  ACB088_RS13290 (ACB088_13290) mazG 2807970..2808776 (-) 807 WP_375037197.1 nucleoside triphosphate pyrophosphohydrolase -
  ACB088_RS13295 (ACB088_13295) - 2808890..2809663 (+) 774 WP_309951963.1 SDR family oxidoreductase -
  ACB088_RS13300 (ACB088_13300) - 2809711..2812017 (-) 2307 WP_092707406.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15408.68 Da        Isoelectric Point: 10.3474

>NTDB_id=1038287 ACB088_RS13285 WP_375037196.1 2807597..2808001(-) (comEA) [Acinetobacter sp. RW6]
MPLSMNLWKSKYYIFIVLFWSLISSTLIQAQSFDQNFKEWKAKQQMYDQKLSMQHSSHSNVSKSSTMTDSSGQVHLNQAN
VDELQKLKGIGEKKAQAIVEYRQKNGGFKNIDEFKNVKGIGPAIFEKNKTRLSL

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1038287 ACB088_RS13285 WP_375037196.1 2807597..2808001(-) (comEA) [Acinetobacter sp. RW6]
ATGCCGCTCAGCATGAATCTTTGGAAGAGTAAGTATTATATTTTTATTGTTTTATTTTGGAGCCTGATTTCATCAACACT
GATTCAGGCCCAATCTTTCGATCAAAATTTTAAGGAGTGGAAAGCTAAACAGCAGATGTATGATCAGAAGTTAAGCATGC
AGCATTCCTCTCATTCCAATGTTTCAAAAAGTTCAACAATGACTGATTCGTCTGGGCAGGTGCACTTGAATCAAGCCAAT
GTTGATGAGCTTCAAAAGCTAAAAGGGATTGGTGAGAAAAAGGCTCAGGCGATTGTAGAATACCGTCAAAAGAATGGTGG
TTTTAAAAATATTGATGAATTTAAAAACGTAAAGGGCATTGGTCCAGCCATTTTTGAAAAGAATAAAACGCGGTTGAGTT
TATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(71-132)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

68.613

100

0.701
  comEA Acinetobacter baumannii D1279779

68.613

100

0.701
  comEA Acinetobacter baylyi ADP1

42.742

92.537

0.396

Multiple sequence alignment