Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   AB9L18_RS04080 Genome accession   NZ_CP167120
Coordinates   892684..893742 (+) Length   352 a.a.
NCBI ID   WP_032951624.1    Uniprot ID   A0AA46AYB7
Organism   Stenotrophomonas lactitubi strain RW9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 887684..898742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L18_RS04065 (AB9L18_04065) - 887958..888695 (+) 738 WP_375069471.1 hypothetical protein -
  AB9L18_RS04070 (AB9L18_04070) - 888772..889416 (-) 645 WP_089236654.1 hypothetical protein -
  AB9L18_RS04075 (AB9L18_04075) - 890040..892466 (-) 2427 WP_375069472.1 penicillin-binding protein 1A -
  AB9L18_RS04080 (AB9L18_04080) pilM 892684..893742 (+) 1059 WP_032951624.1 pilus assembly protein PilM Machinery gene
  AB9L18_RS04085 (AB9L18_04085) - 893742..894638 (+) 897 WP_205406300.1 PilN domain-containing protein -
  AB9L18_RS04090 (AB9L18_04090) - 894635..895291 (+) 657 WP_100553441.1 type 4a pilus biogenesis protein PilO -
  AB9L18_RS04095 (AB9L18_04095) - 895318..895824 (+) 507 WP_080150643.1 pilus assembly protein PilP -
  AB9L18_RS04100 (AB9L18_04100) - 895846..897828 (+) 1983 WP_205406301.1 type IV pilus secretin PilQ -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37695.33 Da        Isoelectric Point: 4.4047

>NTDB_id=1038259 AB9L18_RS04080 WP_032951624.1 892684..893742(+) (pilM) [Stenotrophomonas lactitubi strain RW9]
MGLIPKSQSPLIGVDISSTAVKLLQLSRSGNRFRVEHYAVEPLPPNAVVEKNIVEVEAVGEAIRRAMNRSGSKAKLAAAA
VAGSAVITKVIPMPADLDENDMEAQIELEAVNYIPYPIEEVNLDFEVIGAIPNNPEMVQVLLAASRSENVELRQSALELG
GLQAKVMDVEAFAVENAFALVASELPVSAEGVVALVDIGATMTTLNVLRGGRSLYSREQVFGGKQLTDEIMRRYGLSYEE
AGLAKRQGGLPESYEMEVLEPFKEATVQQISRLLQFFYAGSEFNRVDHIVLAGGCAALAGLPEMVEEQLGVPTVVANPLA
QMTLGPKVQAHALAQDAPALMIATGLALRSFD

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=1038259 AB9L18_RS04080 WP_032951624.1 892684..893742(+) (pilM) [Stenotrophomonas lactitubi strain RW9]
GTGGGGCTCATCCCAAAAAGTCAGTCGCCGCTCATTGGCGTCGACATCAGTTCGACTGCGGTAAAGCTGTTGCAGCTTTC
CCGCAGCGGCAACCGTTTCCGTGTGGAACATTACGCCGTGGAACCGCTGCCGCCGAACGCGGTGGTGGAGAAGAACATCG
TCGAAGTGGAGGCCGTGGGAGAGGCCATCCGCCGGGCGATGAACCGTTCCGGCAGCAAGGCCAAGCTGGCCGCTGCGGCC
GTGGCCGGTTCGGCGGTGATCACCAAGGTGATCCCGATGCCGGCCGACCTGGACGAGAACGACATGGAAGCCCAGATCGA
GCTGGAAGCGGTCAACTACATTCCGTATCCGATCGAGGAAGTGAACCTGGACTTCGAGGTGATCGGGGCGATCCCGAACA
ACCCGGAAATGGTCCAGGTGCTGCTGGCTGCCTCGCGTTCGGAAAACGTTGAATTGCGCCAGTCGGCACTGGAACTGGGT
GGCCTGCAGGCCAAGGTGATGGACGTGGAGGCCTTCGCGGTCGAGAACGCCTTCGCCCTGGTGGCCAGCGAGCTGCCGGT
TTCGGCCGAGGGCGTGGTTGCGCTGGTCGATATCGGCGCCACCATGACCACCCTCAACGTACTGCGCGGTGGCCGCAGCC
TGTACAGCCGCGAACAGGTGTTCGGTGGCAAGCAGCTGACCGACGAGATCATGCGCCGCTATGGCCTGAGCTACGAGGAA
GCCGGTCTGGCCAAGCGCCAGGGCGGGCTGCCGGAAAGCTACGAGATGGAAGTGCTGGAGCCGTTCAAGGAAGCCACGGT
GCAGCAGATCAGCCGTCTGCTGCAATTCTTCTACGCGGGTAGTGAATTCAACCGGGTCGACCACATCGTGCTGGCTGGCG
GCTGTGCTGCCCTTGCAGGCCTGCCGGAGATGGTCGAGGAACAGCTGGGCGTGCCGACCGTGGTCGCCAACCCGCTGGCA
CAGATGACCCTGGGGCCGAAGGTGCAGGCGCACGCGTTGGCCCAGGACGCCCCCGCGCTGATGATCGCGACCGGTCTGGC
GCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(13-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

51.989

100

0.52
  comM Acinetobacter nosocomialis M2

51.989

100

0.52
  comM Acinetobacter baylyi ADP1

50.284

100

0.503
  pilM Legionella pneumophila strain ERS1305867

47.293

99.716

0.472

Multiple sequence alignment