Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB7216_RS09545 Genome accession   NZ_CP167091
Coordinates   1936545..1937054 (+) Length   169 a.a.
NCBI ID   WP_274591095.1    Uniprot ID   -
Organism   Marinovum algicola strain DG 1292     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1931545..1942054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB7216_RS09520 pyrH 1932427..1933167 (-) 741 WP_074835613.1 UMP kinase -
  AB7216_RS09525 miaA 1933294..1934181 (+) 888 WP_274591092.1 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA -
  AB7216_RS09530 - 1934280..1935194 (+) 915 WP_074835610.1 AraC family transcriptional regulator -
  AB7216_RS09535 thpR 1935202..1935771 (+) 570 WP_274591093.1 RNA 2',3'-cyclic phosphodiesterase -
  AB7216_RS09540 - 1935777..1936376 (-) 600 WP_274591094.1 lytic transglycosylase domain-containing protein -
  AB7216_RS09545 ssb 1936545..1937054 (+) 510 WP_274591095.1 single-stranded DNA-binding protein Machinery gene
  AB7216_RS09550 - 1937180..1937590 (-) 411 WP_048531699.1 SufE family protein -
  AB7216_RS09555 - 1937709..1938215 (+) 507 WP_274591096.1 hypothetical protein -
  AB7216_RS09560 rnd 1938268..1939425 (-) 1158 WP_048531697.1 ribonuclease D -
  AB7216_RS09565 purN 1939507..1940088 (-) 582 WP_274591097.1 phosphoribosylglycinamide formyltransferase -
  AB7216_RS09570 purM 1940085..1941137 (-) 1053 WP_274591098.1 phosphoribosylformylglycinamidine cyclo-ligase -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18108.75 Da        Isoelectric Point: 5.2955

>NTDB_id=1038216 AB7216_RS09545 WP_274591095.1 1936545..1937054(+) (ssb) [Marinovum algicola strain DG 1292]
MAGSVNKVILIGNLGRDPEVRTFQNGGKVCNLRIATSETWKDRNTGERRERTEWHSVAIFNEGLVRVAEQYLRKGSKVYL
EGQLQTRKWQDQSGQDRYSTEVVLQGFGSTLTMLDGREGGGGGGGFGGSGQGNYGGGYDSGPQDQGYGGGGSQGGGNPPS
RDIDDEIPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1038216 AB7216_RS09545 WP_274591095.1 1936545..1937054(+) (ssb) [Marinovum algicola strain DG 1292]
ATGGCCGGGTCAGTCAACAAAGTCATTCTCATCGGAAATCTCGGGCGCGACCCGGAAGTGCGGACCTTTCAGAATGGCGG
TAAGGTCTGCAATCTGCGCATCGCAACCTCCGAAACCTGGAAGGATCGCAACACCGGTGAACGCCGCGAGCGCACCGAAT
GGCATTCGGTCGCGATCTTCAACGAAGGGCTGGTGCGCGTCGCAGAGCAATATCTGCGCAAGGGATCAAAGGTTTACCTC
GAAGGTCAGCTTCAGACCCGCAAATGGCAGGACCAATCCGGCCAGGATCGCTATTCCACCGAGGTGGTGTTGCAGGGCTT
TGGCAGCACCCTGACCATGCTCGACGGTCGCGAGGGCGGCGGCGGTGGCGGCGGCTTTGGTGGCAGCGGCCAGGGCAACT
ACGGCGGCGGCTATGACAGCGGCCCGCAGGATCAGGGCTATGGCGGTGGCGGCAGCCAGGGCGGCGGAAACCCGCCCAGC
CGCGACATCGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.613

100

0.568
  ssb Vibrio cholerae strain A1552

54.913

100

0.562
  ssb Neisseria meningitidis MC58

43.017

100

0.456
  ssb Neisseria gonorrhoeae MS11

43.017

100

0.456

Multiple sequence alignment