Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACB336_RS07850 Genome accession   NZ_CP167000
Coordinates   1537809..1538300 (-) Length   163 a.a.
NCBI ID   WP_111677461.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain Isolate 33     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1532809..1543300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACB336_RS07835 (ACB336_07840) - 1535539..1536483 (+) 945 WP_002983147.1 magnesium transporter CorA family protein -
  ACB336_RS07840 (ACB336_07845) - 1536616..1537272 (+) 657 WP_010922629.1 DUF1129 domain-containing protein -
  ACB336_RS07845 (ACB336_07850) rpsR 1537405..1537644 (-) 240 WP_002983142.1 30S ribosomal protein S18 -
  ACB336_RS07850 (ACB336_07855) ssbA 1537809..1538300 (-) 492 WP_111677461.1 single-stranded DNA-binding protein Machinery gene
  ACB336_RS07855 (ACB336_07860) rpsF 1538322..1538612 (-) 291 WP_002983117.1 30S ribosomal protein S6 -
  ACB336_RS07860 (ACB336_07865) - 1538785..1539078 (-) 294 WP_002983113.1 hypothetical protein -
  ACB336_RS07865 (ACB336_07870) mutY 1539246..1540400 (+) 1155 WP_015055997.1 A/G-specific adenine glycosylase -
  ACB336_RS07870 (ACB336_07875) - 1540476..1541063 (+) 588 WP_010922631.1 helix-turn-helix domain-containing protein -
  ACB336_RS07875 (ACB336_07880) trxA 1541115..1541447 (-) 333 WP_001932060.1 thioredoxin -
  ACB336_RS07880 (ACB336_07885) - 1541510..1542010 (-) 501 WP_015055998.1 phosphatase PAP2 family protein -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 18011.84 Da        Isoelectric Point: 4.8894

>NTDB_id=1036824 ACB336_RS07850 WP_111677461.1 1537809..1538300(-) (ssbA) [Streptococcus pyogenes strain Isolate 33]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRTFKSQNGEREADFINCVIWRQPAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREGGSTGSFNGGFNNNTSSSNSYSAPAQQMPNFGRDDSPFGNSNPMDISDDD
LPF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=1036824 ACB336_RS07850 WP_111677461.1 1537809..1538300(-) (ssbA) [Streptococcus pyogenes strain Isolate 33]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGATGCAGAACTTCGTTACACACCAAGTCAAGTAGCTGTGGC
TACCTTCACACTTGCTGTTAACCGTACCTTTAAAAGCCAAAATGGTGAACGCGAGGCAGATTTCATTAACTGTGTGATCT
GGCGTCAACCGGCTGAAAATTTAGCGAACTGGGCTAAAAAAGGTGCTTTGATCGGAGTTACGGGTCGTATTCAGACACGT
AACTACGAAAACCAACAAGGACAACGTGTCTATGTAACAGAAGTTGTTGCAGATAATTTCCAAATGTTGGAAAGTCGTGC
TACACGTGAAGGTGGCTCAACTGGCTCATTTAATGGTGGTTTTAACAATAACACTTCATCATCAAACAGTTACTCAGCGC
CTGCACAACAAATGCCTAACTTTGGAAGAGATGATAGCCCATTTGGGAACTCAAACCCGATGGATATCTCAGATGACGAT
CTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.195

100

0.632
  ssb Latilactobacillus sakei subsp. sakei 23K

58.48

100

0.614
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

65.031

0.374
  ssbB/cilA Streptococcus pneumoniae TIGR4

54.128

66.871

0.362

Multiple sequence alignment