Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   AB8615_RS03670 Genome accession   NZ_CP166993
Coordinates   746978..747394 (-) Length   138 a.a.
NCBI ID   WP_418152710.1    Uniprot ID   -
Organism   Litorimonas sp. RW-G-Af-16     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 741978..752394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8615_RS03650 (AB8615_03650) pgl 742398..743117 (+) 720 WP_409433584.1 6-phosphogluconolactonase -
  AB8615_RS03655 (AB8615_03655) edd 743128..744972 (+) 1845 WP_409433585.1 phosphogluconate dehydratase -
  AB8615_RS03660 (AB8615_03660) glk 744972..745934 (+) 963 WP_418152708.1 glucokinase -
  AB8615_RS03665 (AB8615_03665) - 745997..746971 (+) 975 WP_409433587.1 SMP-30/gluconolactonase/LRE family protein -
  AB8615_RS03670 (AB8615_03670) rcrQ 746978..747394 (-) 417 WP_418152710.1 ATP-binding cassette domain-containing protein Regulator
  AB8615_RS03675 (AB8615_03675) - 747363..748871 (-) 1509 WP_418152712.1 ABC transporter transmembrane domain-containing protein -
  AB8615_RS03680 (AB8615_03680) - 748934..749485 (-) 552 WP_418152714.1 hypothetical protein -
  AB8615_RS03685 (AB8615_03685) queC 749533..750234 (+) 702 WP_409433590.1 7-cyano-7-deazaguanine synthase QueC -
  AB8615_RS03690 (AB8615_03690) queE 750234..750878 (+) 645 WP_409433591.1 7-carboxy-7-deazaguanine synthase -
  AB8615_RS03695 (AB8615_03695) - 750895..751509 (-) 615 WP_409433592.1 hypothetical protein -
  AB8615_RS03700 (AB8615_03700) - 751596..752003 (-) 408 WP_409433593.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14792.81 Da        Isoelectric Point: 4.9047

>NTDB_id=1036612 AB8615_RS03670 WP_418152710.1 746978..747394(-) (rcrQ) [Litorimonas sp. RW-G-Af-16]
MSAAKAAYAHDFIMALPEGYDTDLGERSTTLSGGQRQRLAIARAILRNAPILLLDEATSALDSESERAVQQAFEEMSQGR
TTLVIAHRLSTVLKADKILVMDAGQIVETGTHAELMAKGGLYATLADIQFDQSAGLKT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=1036612 AB8615_RS03670 WP_418152710.1 746978..747394(-) (rcrQ) [Litorimonas sp. RW-G-Af-16]
ATGAGCGCTGCCAAAGCCGCCTATGCCCATGACTTTATCATGGCCCTGCCCGAAGGTTATGACACAGACTTGGGGGAGCG
CAGCACCACGCTCTCTGGCGGACAGCGACAACGCCTCGCCATTGCGCGTGCGATCCTGCGAAATGCACCGATCTTGCTCT
TGGACGAAGCGACAAGTGCGCTGGACTCAGAGAGTGAACGCGCCGTGCAACAAGCATTCGAAGAAATGAGCCAAGGGCGG
ACAACGCTCGTCATCGCCCATCGTCTCTCGACCGTGTTGAAAGCCGACAAAATTCTGGTCATGGACGCGGGACAGATTGT
GGAGACTGGCACCCATGCGGAGCTAATGGCCAAAGGCGGGCTATATGCGACGCTCGCTGATATTCAGTTCGATCAGTCGG
CAGGGTTGAAGACTTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(18-59)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

54.615

94.203

0.514
  comA/nlmT Streptococcus mutans UA159

47.788

81.884

0.391
  comA Streptococcus mitis NCTC 12261

46.429

81.159

0.377
  comA Streptococcus mitis SK321

46.429

81.159

0.377
  rcrP Streptococcus mutans UA159

40

94.203

0.377
  comA Streptococcus pneumoniae Rx1

45.536

81.159

0.37
  comA Streptococcus pneumoniae D39

45.536

81.159

0.37
  comA Streptococcus pneumoniae R6

45.536

81.159

0.37
  comA Streptococcus pneumoniae TIGR4

45.536

81.159

0.37

Multiple sequence alignment