Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | ACA087_RS26325 | Genome accession | NZ_CP166975 |
| Coordinates | 5802956..5803468 (+) | Length | 170 a.a. |
| NCBI ID | WP_009045846.1 | Uniprot ID | A0AB33WX86 |
| Organism | Pseudomonas chlororaphis strain Pc01-6 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 5797956..5808468
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACA087_RS26310 (ACA087_26305) | bfr | 5797979..5798443 (+) | 465 | WP_007924173.1 | bacterioferritin | - |
| ACA087_RS26315 (ACA087_26310) | uvrA | 5798537..5801371 (-) | 2835 | WP_096375575.1 | excinuclease ABC subunit UvrA | - |
| ACA087_RS26320 (ACA087_26315) | - | 5801552..5802946 (+) | 1395 | WP_124322534.1 | MFS transporter | - |
| ACA087_RS26325 (ACA087_26320) | ssb | 5802956..5803468 (+) | 513 | WP_009045846.1 | single-stranded DNA-binding protein | Machinery gene |
| ACA087_RS26330 (ACA087_26325) | - | 5803608..5804162 (-) | 555 | WP_371355258.1 | cysteine hydrolase family protein | - |
| ACA087_RS26335 (ACA087_26330) | - | 5804266..5805273 (+) | 1008 | WP_371355259.1 | GlxA family transcriptional regulator | - |
| ACA087_RS26340 (ACA087_26335) | - | 5805454..5806563 (+) | 1110 | WP_371355260.1 | DUF3182 family protein | - |
| ACA087_RS26345 (ACA087_26340) | - | 5806553..5807308 (+) | 756 | WP_371355261.1 | alpha/beta hydrolase family protein | - |
| ACA087_RS26350 (ACA087_26345) | - | 5807380..5808375 (-) | 996 | WP_124309674.1 | lysylphosphatidylglycerol synthase domain-containing protein | - |
Sequence
Protein
Download Length: 170 a.a. Molecular weight: 18934.07 Da Isoelectric Point: 5.9455
>NTDB_id=1036513 ACA087_RS26325 WP_009045846.1 5802956..5803468(+) (ssb) [Pseudomonas chlororaphis strain Pc01-6]
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF
MARGVNKVILVGTCGQDPEVRYLPNGNAVTNLSLATSEQWTDKQTGQKVEKTEWHRVSMFGKVAEIAGEYLRKGSQVYIE
GKLQTREWEKDGIKRYTTEIIVDMQGTMQLLGGRPQGDQGQGMGNSAPRPQQSRPQPSQAPQRESRPAPQQSSPQPAQNF
DDSFDDDIPF
Nucleotide
Download Length: 513 bp
>NTDB_id=1036513 ACA087_RS26325 WP_009045846.1 5802956..5803468(+) (ssb) [Pseudomonas chlororaphis strain Pc01-6]
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGGCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCGCAACCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA
ATGGCCCGTGGGGTTAACAAAGTCATATTGGTCGGCACTTGCGGCCAGGATCCTGAAGTTCGCTACCTGCCTAACGGTAA
CGCCGTGACCAACCTGAGTCTGGCCACCAGCGAACAGTGGACCGACAAGCAGACCGGTCAGAAGGTCGAGAAGACCGAAT
GGCACCGTGTGTCGATGTTCGGCAAGGTCGCGGAAATCGCCGGCGAATACCTGCGCAAAGGTTCGCAGGTCTACATCGAA
GGCAAGCTGCAGACCCGCGAGTGGGAAAAAGACGGCATCAAGCGTTACACCACTGAAATCATCGTCGACATGCAGGGCAC
CATGCAGCTGCTGGGCGGCCGTCCACAGGGCGACCAGGGGCAGGGCATGGGCAACTCCGCGCCACGTCCGCAGCAGTCGC
GTCCGCAACCTTCGCAGGCGCCACAACGCGAATCGCGTCCAGCGCCTCAGCAGTCCTCGCCGCAGCCGGCGCAGAACTTC
GACGACAGCTTCGATGACGATATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
58.427 |
100 |
0.612 |
| ssb | Glaesserella parasuis strain SC1401 |
46.392 |
100 |
0.529 |
| ssb | Neisseria meningitidis MC58 |
48.864 |
100 |
0.506 |
| ssb | Neisseria gonorrhoeae MS11 |
48.295 |
100 |
0.5 |